nsv1190862
- Organism: Homo sapiens
- Study:nstd113 (Polyak et al. 2015)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:373,796
- Publication(s):Polyak et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1749 SVs from 98 studies. See in: genome view
Overlapping variant regions from other studies: 1749 SVs from 98 studies. See in: genome view
Overlapping variant regions from other studies: 587 SVs from 29 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1190862 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 16,392,986 | 16,766,781 |
| nsv1190862 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 16,250,495 | 16,624,290 |
| nsv1190862 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 16,294,866 | 16,668,661 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv7463231 | copy number loss | 43928 | Oligo aCGH | Probe signal intensity | nssv7461676, nssv7461812 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv7463231 | Remapped | Perfect | NC_000008.11:g.(?_ 16392986)_(1676678 1_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 16,392,986 | 16,766,781 |
| nssv7463231 | Remapped | Perfect | NC_000008.10:g.(?_ 16250495)_(1662429 0_?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 16,250,495 | 16,624,290 |
| nssv7463231 | Submitted genomic | NC_000008.9:g.(?_1 6294866)_(16668661 _?)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 16,294,866 | 16,668,661 |