nsv1377411
- Organism: Homo sapiens
- Study:nstd122 (Duyzend et al. 2015)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:214,856
- Publication(s):Duyzend et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1248 SVs from 101 studies. See in: genome view
Overlapping variant regions from other studies: 610 SVs from 66 studies. See in: genome view
Overlapping variant regions from other studies: 1248 SVs from 101 studies. See in: genome view
Overlapping variant regions from other studies: 639 SVs from 30 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1377411 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 32,166,460 | 32,381,315 |
| nsv1377411 | Remapped | Pass | GRCh38.p12 | PATCHES | Second Pass | NW_011332701.1 | Chr15|NW_0 11332701.1 | 4,377,574 | 4,501,706 |
| nsv1377411 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 32,458,661 | 32,673,516 |
| nsv1377411 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000015.8 | Chr15 | 30,245,953 | 30,460,808 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv8020833 | copy number loss | SNP array | Probe signal intensity |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv8020833 | Remapped | Pass | NW_011332701.1:g.( ?_4377574)_(450170 6_?)del | GRCh38.p12 | Second Pass | NW_011332701.1 | Chr15|NW_0 11332701.1 | 4,377,574 | 4,501,706 |
| nssv8020833 | Remapped | Perfect | NC_000015.10:g.(?_ 32166460)_(3238131 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 32,166,460 | 32,381,315 |
| nssv8020833 | Remapped | Perfect | NC_000015.9:g.(?_3 2458661)_(32673516 _?)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 32,458,661 | 32,673,516 |
| nssv8020833 | Submitted genomic | NC_000015.8:g.(?_3 0245953)_(30460808 _?)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 30,245,953 | 30,460,808 |