nsv1652174
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:78
- Description:MOTIF=[ATCT],NS=[300],REF=[19.5],RL=[78],RPA=[
14.5,15.5,16.5,17.5,18.5,20.5],RU=[ATCT],QUAL=[18434.6] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 119 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 119 SVs from 29 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1652174 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000012.12 | Chr12 | 81,361,975 | 81,362,052 |
| nsv1652174 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000012.11 | Chr12 | 81,755,754 | 81,755,831 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv9605173 | short tandem repeat | (ATCT) 16.5 | Sequencing | Genotyping |
| nssv9605174 | short tandem repeat | (ATCT) 17.5 | Sequencing | Genotyping |
| nssv9605175 | short tandem repeat | (ATCT) 18.5 | Sequencing | Genotyping |
| nssv9605176 | short tandem repeat | (ATCT) 20.5 | Sequencing | Genotyping |
| nssv9605177 | short tandem repeat | (ATCT) 15.5 | Sequencing | Genotyping |
| nssv9605178 | short tandem repeat | (ATCT) 14.5 | Sequencing | Genotyping |
| nssv9605179 | short tandem repeat | (ATCT) 19.5 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv9605173 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 81,361,975 | 81,362,052 |
| nssv9605174 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 81,361,975 | 81,362,052 |
| nssv9605175 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 81,361,975 | 81,362,052 |
| nssv9605176 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 81,361,975 | 81,362,052 |
| nssv9605177 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 81,361,975 | 81,362,052 |
| nssv9605178 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 81,361,975 | 81,362,052 |
| nssv9605179 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 81,361,975 | 81,362,052 |
| nssv9605173 | Submitted genomic | GRCh37 (hg19) | NC_000012.11 | Chr12 | 81,755,754 | 81,755,831 | ||
| nssv9605174 | Submitted genomic | GRCh37 (hg19) | NC_000012.11 | Chr12 | 81,755,754 | 81,755,831 | ||
| nssv9605175 | Submitted genomic | GRCh37 (hg19) | NC_000012.11 | Chr12 | 81,755,754 | 81,755,831 | ||
| nssv9605176 | Submitted genomic | GRCh37 (hg19) | NC_000012.11 | Chr12 | 81,755,754 | 81,755,831 | ||
| nssv9605177 | Submitted genomic | GRCh37 (hg19) | NC_000012.11 | Chr12 | 81,755,754 | 81,755,831 | ||
| nssv9605178 | Submitted genomic | GRCh37 (hg19) | NC_000012.11 | Chr12 | 81,755,754 | 81,755,831 | ||
| nssv9605179 | Submitted genomic | GRCh37 (hg19) | NC_000012.11 | Chr12 | 81,755,754 | 81,755,831 |