nsv1725395
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:80
- Description:MOTIF=[CTAT],NS=[299],REF=[20.0],RL=[80],RPA=[
14.25,15.25,17.25,19.0,21.0,22.0],RU=[CTAT],QUAL=[30684] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 262 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 262 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1725395 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000013.11 | Chr13 | 101,234,810 | 101,234,889 |
| nsv1725395 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000013.10 | Chr13 | 101,887,161 | 101,887,240 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv9842841 | short tandem repeat | (CTAT) 19 | Sequencing | Genotyping |
| nssv9842842 | short tandem repeat | (CTAT) 15.25 | Sequencing | Genotyping |
| nssv9842843 | short tandem repeat | (CTAT) 21 | Sequencing | Genotyping |
| nssv9842844 | short tandem repeat | (CTAT) 14.25 | Sequencing | Genotyping |
| nssv9842845 | short tandem repeat | (CTAT) 17.25 | Sequencing | Genotyping |
| nssv9842846 | short tandem repeat | (CTAT) 22 | Sequencing | Genotyping |
| nssv9842847 | short tandem repeat | (CTAT) 20 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv9842841 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 101,234,810 | 101,234,889 |
| nssv9842842 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 101,234,810 | 101,234,889 |
| nssv9842843 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 101,234,810 | 101,234,889 |
| nssv9842844 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 101,234,810 | 101,234,889 |
| nssv9842845 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 101,234,810 | 101,234,889 |
| nssv9842846 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 101,234,810 | 101,234,889 |
| nssv9842847 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 101,234,810 | 101,234,889 |
| nssv9842841 | Submitted genomic | GRCh37 (hg19) | NC_000013.10 | Chr13 | 101,887,161 | 101,887,240 | ||
| nssv9842842 | Submitted genomic | GRCh37 (hg19) | NC_000013.10 | Chr13 | 101,887,161 | 101,887,240 | ||
| nssv9842843 | Submitted genomic | GRCh37 (hg19) | NC_000013.10 | Chr13 | 101,887,161 | 101,887,240 | ||
| nssv9842844 | Submitted genomic | GRCh37 (hg19) | NC_000013.10 | Chr13 | 101,887,161 | 101,887,240 | ||
| nssv9842845 | Submitted genomic | GRCh37 (hg19) | NC_000013.10 | Chr13 | 101,887,161 | 101,887,240 | ||
| nssv9842846 | Submitted genomic | GRCh37 (hg19) | NC_000013.10 | Chr13 | 101,887,161 | 101,887,240 | ||
| nssv9842847 | Submitted genomic | GRCh37 (hg19) | NC_000013.10 | Chr13 | 101,887,161 | 101,887,240 |