nsv174
- Organism: Homo sapiens
- Study:nstd1 (Tuzun et al. 2005)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:33,697
- Publication(s):Tuzun et al. 2005
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 470 SVs from 65 studies. See in: genome view
Overlapping variant regions from other studies: 470 SVs from 65 studies. See in: genome view
Overlapping variant regions from other studies: 5 SVs from 3 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv174 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 36,340,817 | 36,374,513 |
| nsv174 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000019.9 | Chr19 | 36,831,719 | 36,865,415 |
| nsv174 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000019.8 | Chr19 | 41,523,559 | 41,557,255 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv174 | deletion | SAMN00000376 | Sequencing | Paired-end mapping | 297 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv174 | Remapped | Perfect | NC_000019.10:g.(36 340817_?)_(?_36374 513)del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 36,340,817 | 36,374,513 |
| nssv174 | Remapped | Perfect | NC_000019.9:g.(368 31719_?)_(?_368654 15)del | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 36,831,719 | 36,865,415 |
| nssv174 | Submitted genomic | NC_000019.8:g.(415 23559_?)_(?_415572 55)del10296 | NCBI35 (hg17) | NC_000019.8 | Chr19 | 41,523,559 | 41,557,255 |