nsv176
- Organism: Homo sapiens
- Study:nstd1 (Tuzun et al. 2005)
- Variant Type:insertion
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:23,920
- Publication(s):Tuzun et al. 2005
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 287 SVs from 64 studies. See in: genome view
Overlapping variant regions from other studies: 115 SVs from 40 studies. See in: genome view
Overlapping variant regions from other studies: 313 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 11 SVs from 7 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv176 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 39,866,539 | 39,890,458 |
| nsv176 | Remapped | Perfect | GRCh38.p12 | PATCHES | Second Pass | NW_009646206.1 | Chr19|NW_0 09646206.1 | 126,415 | 150,334 |
| nsv176 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000019.9 | Chr19 | 40,357,179 | 40,381,098 |
| nsv176 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000019.8 | Chr19 | 45,049,019 | 45,072,938 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv176 | insertion | SAMN00000376 | Sequencing | Paired-end mapping | 297 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv176 | Remapped | Perfect | NW_009646206.1:g.( 126415_?)_(?_15033 4)ins14477 | GRCh38.p12 | Second Pass | NW_009646206.1 | Chr19|NW_0 09646206.1 | 126,415 | 150,334 |
| nssv176 | Remapped | Perfect | NC_000019.10:g.(39 866539_?)_(?_39890 458)ins14477 | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 39,866,539 | 39,890,458 |
| nssv176 | Remapped | Perfect | NC_000019.9:g.(403 57179_?)_(?_403810 98)ins14477 | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 40,357,179 | 40,381,098 |
| nssv176 | Submitted genomic | NC_000019.8:g.(450 49019_?)_(?_450729 38)ins14477 | NCBI35 (hg17) | NC_000019.8 | Chr19 | 45,049,019 | 45,072,938 |