nsv179
- Organism: Homo sapiens
- Study:nstd1 (Tuzun et al. 2005)
- Variant Type:insertion
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:17,951
- Publication(s):Tuzun et al. 2005
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 220 SVs from 44 studies. See in: genome view
Overlapping variant regions from other studies: 220 SVs from 44 studies. See in: genome view
Overlapping variant regions from other studies: 4 SVs from 4 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv179 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 41,819,676 | 41,837,626 |
| nsv179 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 42,046,816 | 42,064,766 |
| nsv179 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000002.9 | Chr2 | 41,958,467 | 41,976,417 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv179 | insertion | SAMN00000376 | Sequencing | Paired-end mapping | 297 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv179 | Remapped | Perfect | NC_000002.12:g.(41 819676_?)_(?_41837 626)ins11093 | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 41,819,676 | 41,837,626 |
| nssv179 | Remapped | Perfect | NC_000002.11:g.(42 046816_?)_(?_42064 766)ins11093 | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 42,046,816 | 42,064,766 |
| nssv179 | Submitted genomic | NC_000002.9:g.(419 58467_?)_(?_419764 17)ins11093 | NCBI35 (hg17) | NC_000002.9 | Chr2 | 41,958,467 | 41,976,417 |