nsv1937
- Organism: Homo sapiens
- Study:nstd2 (Kidd et al. 2008)
- Variant Type:insertion
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:2
- Validation:Yes
- Clinical Assertions: No
- Region Size:53,605
- Publication(s):Kidd et al. 2008
- TRACE: TEMPLATE_ID='1205403_ABC13_11_000000960622_C18'
- TRACE: TEMPLATE_ID='1205403_ABC13_11_000048856500_K17'
- TRACE: TEMPLATE_ID='173650_ABC10_2_1_000044117200_I3'
- TRACE: TEMPLATE_ID='173650_ABC10_2_1_000044524400_G15'
- TRACE: TEMPLATE_ID='174222_ABC10_2_1_000044584900_M3'
- TRACE: TEMPLATE_ID='174552_ABC10_2_1_000044636600_B17'
- TRACE: TEMPLATE_ID='174552_ABC10_2_1_000044688700_O9'
- Overlapping Genes
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1009 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 226 SVs from 50 studies. See in: genome view
Overlapping variant regions from other studies: 649 SVs from 45 studies. See in: genome view
Overlapping variant regions from other studies: 10 SVs from 8 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|
nsv1937 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000017.11 | Chr17 | 236,742 | - | 274,809 |
nsv1937 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NW_003315952.3 | Chr17|NW_0 03315952.3 | 188,565 | 242,169 | - |
nsv1937 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004070872.2 | Chr17|NW_0 04070872.2 | 176,740 | - | 214,807 |
nsv1937 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000017.9 | Chr17 | 86,533 | - | 124,600 |
Variant Call Information
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|
nssv5625 | Remapped | Pass | NW_003315952.3:g.( 188565_?)_(?_23377 2)ins5434 | GRCh38.p12 | Second Pass | NW_003315952.3 | Chr17|NW_0 03315952.3 | 188,565 | - | 233,772 |
nssv1333 | Remapped | Pass | NW_003315952.3:g.( 203101_?)_(242169_ ?)ins11496 | GRCh38.p12 | Second Pass | NW_003315952.3 | Chr17|NW_0 03315952.3 | 203,101 | 242,169 | - |
nssv5625 | Remapped | Perfect | NC_000017.11:g.(23 6742_?)_(?_265238) ins5434 | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 236,742 | - | 265,238 |
nssv1333 | Remapped | Perfect | NC_000017.11:g.(25 1591_?)_(?_274809) ins11496 | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 251,591 | - | 274,809 |
nssv5625 | Remapped | Perfect | NW_004070872.2:g.( 176740_?)_(?_20523 6)ins5434 | GRCh37.p13 | First Pass | NW_004070872.2 | Chr17|NW_0 04070872.2 | 176,740 | - | 205,236 |
nssv1333 | Remapped | Perfect | NW_004070872.2:g.( 191589_?)_(?_21480 7)ins11496 | GRCh37.p13 | First Pass | NW_004070872.2 | Chr17|NW_0 04070872.2 | 191,589 | - | 214,807 |
nssv5625 | Submitted genomic | NC_000017.9:g.(865 33_?)_(?_115029)in s5434 | NCBI35 (hg17) | NC_000017.9 | Chr17 | 86,533 | - | 115,029 | ||
nssv1333 | Submitted genomic | NC_000017.9:g.(101 382_?)_(?_124600)i ns11496 | NCBI35 (hg17) | NC_000017.9 | Chr17 | 101,382 | - | 124,600 |