nsv1960356
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:3
- Validation:Not tested
- Clinical Assertions: No
- Region Size:110
- Description:MOTIF=[CGCCCT],NS=[301],REF=[6.16667],RL=[37],
RPA=[5.16667,5.83333],RU=[CGCCCT],QUAL=[177544] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 103 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 97 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1960356 | Remapped | Pass | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 44,488,046 | 44,488,155 |
| nsv1960356 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000019.9 | Chr19 | 44,992,256 | 44,992,292 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv10699112 | short tandem repeat | (CGCCCT) 5.83 | Sequencing | Genotyping |
| nssv10699113 | short tandem repeat | (CGCCCT) 5.17 | Sequencing | Genotyping |
| nssv10699114 | short tandem repeat | (CGCCCT) 6.17 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv10699112 | Remapped | Pass | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 44,488,046 | 44,488,155 |
| nssv10699113 | Remapped | Pass | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 44,488,046 | 44,488,155 |
| nssv10699114 | Remapped | Pass | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 44,488,046 | 44,488,155 |
| nssv10699112 | Submitted genomic | GRCh37 (hg19) | NC_000019.9 | Chr19 | 44,992,256 | 44,992,292 | ||
| nssv10699113 | Submitted genomic | GRCh37 (hg19) | NC_000019.9 | Chr19 | 44,992,256 | 44,992,292 | ||
| nssv10699114 | Submitted genomic | GRCh37 (hg19) | NC_000019.9 | Chr19 | 44,992,256 | 44,992,292 |