nsv208
- Organism: Homo sapiens
- Study:nstd1 (Tuzun et al. 2005)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:47,332
- Publication(s):Tuzun et al. 2005
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 672 SVs from 55 studies. See in: genome view
Overlapping variant regions from other studies: 674 SVs from 55 studies. See in: genome view
Overlapping variant regions from other studies: 73 SVs from 28 studies. See in: genome view
Overlapping variant regions from other studies: 50 SVs from 8 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv208 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | 103,973,876 | 104,021,207 |
| nsv208 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000023.10 | ChrX | 103,228,460 | 103,275,775 |
| nsv208 | Remapped | Good | GRCh37.p13 | PATCHES | Second Pass | NW_004070885.1 | ChrX|NW_00 4070885.1 | 110,292 | 157,623 |
| nsv208 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000023.8 | ChrX | 103,034,605 | 103,081,920 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv208 | inversion | SAMN00000376 | Sequencing | Paired-end mapping | 297 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv208 | Remapped | Good | NC_000023.11:g.(10 3973876_?)_(?_1040 21207)inv | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 103,973,876 | 104,021,207 |
| nssv208 | Remapped | Good | NW_004070885.1:g.( 110292_?)_(?_15762 3)inv | GRCh37.p13 | Second Pass | NW_004070885.1 | ChrX|NW_00 4070885.1 | 110,292 | 157,623 |
| nssv208 | Remapped | Perfect | NC_000023.10:g.(10 3228460_?)_(?_1032 75775)inv | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 103,228,460 | 103,275,775 |
| nssv208 | Submitted genomic | NC_000023.8:g.(103 034605_?)_(?_10308 1920)inv | NCBI35 (hg17) | NC_000023.8 | ChrX | 103,034,605 | 103,081,920 |