nsv209
- Organism: Homo sapiens
- Study:nstd1 (Tuzun et al. 2005)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:97,349
- Publication(s):Tuzun et al. 2005
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 704 SVs from 58 studies. See in: genome view
Overlapping variant regions from other studies: 699 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 101 SVs from 30 studies. See in: genome view
Overlapping variant regions from other studies: 52 SVs from 7 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv209 | Remapped | Pass | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | 103,993,825 | 104,091,173 |
| nsv209 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000023.10 | ChrX | 103,248,393 | 103,335,857 |
| nsv209 | Remapped | Pass | GRCh37.p13 | PATCHES | Second Pass | NW_004070885.1 | ChrX|NW_00 4070885.1 | 130,241 | 227,589 |
| nsv209 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000023.8 | ChrX | 103,054,538 | 103,142,002 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv209 | inversion | SAMN00000376 | Sequencing | Paired-end mapping | 297 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv209 | Remapped | Pass | NC_000023.11:g.(10 3993825_?)_(?_1040 91173)inv | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 103,993,825 | 104,091,173 |
| nssv209 | Remapped | Pass | NW_004070885.1:g.( 130241_?)_(?_22758 9)inv | GRCh37.p13 | Second Pass | NW_004070885.1 | ChrX|NW_00 4070885.1 | 130,241 | 227,589 |
| nssv209 | Remapped | Perfect | NC_000023.10:g.(10 3248393_?)_(?_1033 35857)inv | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 103,248,393 | 103,335,857 |
| nssv209 | Submitted genomic | NC_000023.8:g.(103 054538_?)_(?_10314 2002)inv | NCBI35 (hg17) | NC_000023.8 | ChrX | 103,054,538 | 103,142,002 |