nsv2105185
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:3
- Validation:Not tested
- Clinical Assertions: No
- Region Size:78
- Description:MOTIF=[CATT],NS=[298],REF=[19.5],RL=[78],RPA=[
18.5,19.0],RU=[CATT],QUAL=[37766] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 172 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 172 SVs from 31 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2105185 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000020.11 | Chr20 | 63,057,558 | 63,057,635 |
| nsv2105185 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000020.10 | Chr20 | 61,688,910 | 61,688,987 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv13069203 | short tandem repeat | (CATT) 19 | Sequencing | Genotyping |
| nssv13069204 | short tandem repeat | (CATT) 18.5 | Sequencing | Genotyping |
| nssv13069205 | short tandem repeat | (CATT) 19.5 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv13069203 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 63,057,558 | 63,057,635 |
| nssv13069204 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 63,057,558 | 63,057,635 |
| nssv13069205 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 63,057,558 | 63,057,635 |
| nssv13069203 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 61,688,910 | 61,688,987 | ||
| nssv13069204 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 61,688,910 | 61,688,987 | ||
| nssv13069205 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 61,688,910 | 61,688,987 |