nsv217
- Organism: Homo sapiens
- Study:nstd1 (Tuzun et al. 2005)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:34,817
- Publication(s):Tuzun et al. 2005
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 557 SVs from 43 studies. See in: genome view
Overlapping variant regions from other studies: 548 SVs from 40 studies. See in: genome view
Overlapping variant regions from other studies: 78 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 34 SVs from 9 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv217 | Remapped | Pass | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | 149,687,327 | 149,722,143 | - |
| nsv217 | Remapped | Pass | GRCh37.p13 | Primary Assembly | Second Pass | NC_000023.10 | ChrX | 148,768,993 | 148,803,803 | - |
| nsv217 | Remapped | Pass | GRCh37.p13 | PATCHES | First Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | 5,211,725 | 5,246,541 | - |
| nsv217 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000023.8 | ChrX | 148,437,890 | - | 148,503,271 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv217 | inversion | SAMN00000376 | Sequencing | Paired-end mapping | 297 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| nssv217 | Remapped | Pass | NC_000023.11:g.(14 9687327_?)_(149722 143_?)inv | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 149,687,327 | 149,722,143 | - |
| nssv217 | Remapped | Pass | NW_004070890.2:g.( 5211725_?)_(524654 1_?)inv | GRCh37.p13 | First Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | 5,211,725 | 5,246,541 | - |
| nssv217 | Remapped | Pass | NC_000023.10:g.(14 8768993_?)_(148803 803_?)inv | GRCh37.p13 | Second Pass | NC_000023.10 | ChrX | 148,768,993 | 148,803,803 | - |
| nssv217 | Submitted genomic | NC_000023.8:g.(148 437890_?)_(?_14850 3271)inv | NCBI35 (hg17) | NC_000023.8 | ChrX | 148,437,890 | - | 148,503,271 |