nsv218
- Organism: Homo sapiens
- Study:nstd1 (Tuzun et al. 2005)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:67,162
- Publication(s):Tuzun et al. 2005
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 611 SVs from 51 studies. See in: genome view
Overlapping variant regions from other studies: 576 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 123 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 43 SVs from 9 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv218 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | 153,148,299 | 153,215,460 |
| nsv218 | Remapped | Good | GRCh37.p13 | Primary Assembly | Second Pass | NC_000023.10 | ChrX | 152,449,927 | 152,517,102 |
| nsv218 | Remapped | Good | GRCh37.p13 | PATCHES | First Pass | NW_003871103.3 | ChrX|NW_00 3871103.3 | 582,282 | 649,443 |
| nsv218 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000023.8 | ChrX | 151,934,123 | 152,001,387 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv218 | inversion | SAMN00000376 | Sequencing | Paired-end mapping | 297 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv218 | Remapped | Good | NC_000023.11:g.(15 3148299_?)_(?_1532 15460)inv | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 153,148,299 | 153,215,460 |
| nssv218 | Remapped | Good | NW_003871103.3:g.( 582282_?)_(?_64944 3)inv | GRCh37.p13 | First Pass | NW_003871103.3 | ChrX|NW_00 3871103.3 | 582,282 | 649,443 |
| nssv218 | Remapped | Good | NC_000023.10:g.(15 2449927_?)_(?_1525 17102)inv | GRCh37.p13 | Second Pass | NC_000023.10 | ChrX | 152,449,927 | 152,517,102 |
| nssv218 | Submitted genomic | NC_000023.8:g.(151 934123_?)_(?_15200 1387)inv | NCBI35 (hg17) | NC_000023.8 | ChrX | 151,934,123 | 152,001,387 |