nsv2188505
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:9
- Validation:Not tested
- Clinical Assertions: No
- Region Size:78
- Description:MOTIF=[CTAT],NS=[300],REF=[19.5],RL=[78],RU=[C
TAT],RPA=[13.5,14.5,15.5,16.5,17.5,18.25,18.5,20.5],QUAL=[
58999.3] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 89 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 5 SVs from 3 studies. See in: genome view
Overlapping variant regions from other studies: 89 SVs from 24 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2188505 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 94,939,954 | 94,940,031 |
| nsv2188505 | Remapped | Perfect | GRCh38.p12 | PATCHES | Second Pass | NW_019805491.1 | Chr3|NW_01 9805491.1 | 47,844 | 47,921 |
| nsv2188505 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 94,658,798 | 94,658,875 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv11201219 | short tandem repeat | (CTAT) 17.5 | Sequencing | Genotyping |
| nssv11201220 | short tandem repeat | (CTAT) 20.5 | Sequencing | Genotyping |
| nssv11201221 | short tandem repeat | (CTAT) 18.5 | Sequencing | Genotyping |
| nssv11202481 | short tandem repeat | (CTAT) 15.5 | Sequencing | Genotyping |
| nssv11202482 | short tandem repeat | (CTAT) 13.5 | Sequencing | Genotyping |
| nssv11202483 | short tandem repeat | (CTAT) 14.5 | Sequencing | Genotyping |
| nssv11202484 | short tandem repeat | (CTAT) 18.25 | Sequencing | Genotyping |
| nssv11351753 | short tandem repeat | (CTAT) 19.5 (ref) | Sequencing | Genotyping |
| nssv11374899 | short tandem repeat | (CTAT) 16.5 | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv11201219 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_019805491.1 | Chr3|NW_01 9805491.1 | 47,844 | 47,921 |
| nssv11201220 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_019805491.1 | Chr3|NW_01 9805491.1 | 47,844 | 47,921 |
| nssv11201221 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_019805491.1 | Chr3|NW_01 9805491.1 | 47,844 | 47,921 |
| nssv11202481 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_019805491.1 | Chr3|NW_01 9805491.1 | 47,844 | 47,921 |
| nssv11202482 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_019805491.1 | Chr3|NW_01 9805491.1 | 47,844 | 47,921 |
| nssv11202483 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_019805491.1 | Chr3|NW_01 9805491.1 | 47,844 | 47,921 |
| nssv11202484 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_019805491.1 | Chr3|NW_01 9805491.1 | 47,844 | 47,921 |
| nssv11351753 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_019805491.1 | Chr3|NW_01 9805491.1 | 47,844 | 47,921 |
| nssv11374899 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_019805491.1 | Chr3|NW_01 9805491.1 | 47,844 | 47,921 |
| nssv11201219 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 94,939,954 | 94,940,031 |
| nssv11201220 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 94,939,954 | 94,940,031 |
| nssv11201221 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 94,939,954 | 94,940,031 |
| nssv11202481 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 94,939,954 | 94,940,031 |
| nssv11202482 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 94,939,954 | 94,940,031 |
| nssv11202483 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 94,939,954 | 94,940,031 |
| nssv11202484 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 94,939,954 | 94,940,031 |
| nssv11351753 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 94,939,954 | 94,940,031 |
| nssv11374899 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 94,939,954 | 94,940,031 |
| nssv11201219 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 94,658,798 | 94,658,875 | ||
| nssv11201220 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 94,658,798 | 94,658,875 | ||
| nssv11201221 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 94,658,798 | 94,658,875 | ||
| nssv11202481 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 94,658,798 | 94,658,875 | ||
| nssv11202482 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 94,658,798 | 94,658,875 | ||
| nssv11202483 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 94,658,798 | 94,658,875 | ||
| nssv11202484 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 94,658,798 | 94,658,875 | ||
| nssv11351753 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 94,658,798 | 94,658,875 | ||
| nssv11374899 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 94,658,798 | 94,658,875 |