nsv219
- Organism: Homo sapiens
- Study:nstd1 (Tuzun et al. 2005)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:27,788
- Publication(s):Tuzun et al. 2005
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 597 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 587 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 75 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 25 SVs from 7 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv219 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | 154,332,731 | 154,360,518 |
| nsv219 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000023.10 | ChrX | 153,561,081 | 153,588,886 |
| nsv219 | Remapped | Good | GRCh37.p13 | PATCHES | Second Pass | NW_003871103.3 | ChrX|NW_00 3871103.3 | 1,766,710 | 1,794,497 |
| nsv219 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000023.8 | ChrX | 153,081,928 | 153,109,733 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv219 | inversion | SAMN00000376 | Sequencing | Paired-end mapping | 297 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv219 | Remapped | Good | NC_000023.11:g.(15 4332731_?)_(?_1543 60518)inv | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 154,332,731 | 154,360,518 |
| nssv219 | Remapped | Good | NW_003871103.3:g.( 1766710_?)_(?_1794 497)inv | GRCh37.p13 | Second Pass | NW_003871103.3 | ChrX|NW_00 3871103.3 | 1,766,710 | 1,794,497 |
| nssv219 | Remapped | Perfect | NC_000023.10:g.(15 3561081_?)_(?_1535 88886)inv | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 153,561,081 | 153,588,886 |
| nssv219 | Submitted genomic | NC_000023.8:g.(153 081928_?)_(?_15310 9733)inv | NCBI35 (hg17) | NC_000023.8 | ChrX | 153,081,928 | 153,109,733 |