nsv2274125
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:3
- Validation:Not tested
- Clinical Assertions: No
- Region Size:80
- Description:MOTIF=[CTTC],NS=[300],REF=[20.0],RL=[80],RPA=[
16.75,17.0],RU=[CTTC],QUAL=[83892.6] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 137 SVs from 28 studies. See in: genome view
Overlapping variant regions from other studies: 137 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2274125 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 123,772,060 | 123,772,139 |
| nsv2274125 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 124,693,215 | 124,693,294 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv11583510 | short tandem repeat | (CTTC) 20 (ref) | Sequencing | Genotyping |
| nssv11584658 | short tandem repeat | (CTTC) 16.75 | Sequencing | Genotyping |
| nssv11718065 | short tandem repeat | (CTTC) 17 | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv11583510 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 123,772,060 | 123,772,139 |
| nssv11584658 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 123,772,060 | 123,772,139 |
| nssv11718065 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 123,772,060 | 123,772,139 |
| nssv11583510 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 124,693,215 | 124,693,294 | ||
| nssv11584658 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 124,693,215 | 124,693,294 | ||
| nssv11718065 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 124,693,215 | 124,693,294 |