nsv2315252
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:8
- Validation:Not tested
- Clinical Assertions: No
- Region Size:78
- Description:MOTIF=[AGAT],NS=[300],REF=[19.5],RL=[78],RPA=[
13.5,14.5,15.5,16.5,17.5,18.5,20.5],RU=[AGAT],QUAL=[38144.
1] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 211 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 211 SVs from 39 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2315252 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 161,766,880 | 161,766,957 |
| nsv2315252 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 162,688,032 | 162,688,109 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv11628761 | short tandem repeat | (AGAT) 15.5 | Sequencing | Genotyping |
| nssv11628762 | short tandem repeat | (AGAT) 14.5 | Sequencing | Genotyping |
| nssv11629581 | short tandem repeat | (AGAT) 13.5 | Sequencing | Genotyping |
| nssv11629582 | short tandem repeat | (AGAT) 19.5 (ref) | Sequencing | Genotyping |
| nssv11652086 | short tandem repeat | (AGAT) 18.5 | Sequencing | Genotyping |
| nssv11652087 | short tandem repeat | (AGAT) 17.5 | Sequencing | Genotyping |
| nssv11652088 | short tandem repeat | (AGAT) 16.5 | Sequencing | Genotyping |
| nssv11652089 | short tandem repeat | (AGAT) 20.5 | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv11628761 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 161,766,880 | 161,766,957 |
| nssv11628762 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 161,766,880 | 161,766,957 |
| nssv11629581 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 161,766,880 | 161,766,957 |
| nssv11629582 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 161,766,880 | 161,766,957 |
| nssv11652086 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 161,766,880 | 161,766,957 |
| nssv11652087 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 161,766,880 | 161,766,957 |
| nssv11652088 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 161,766,880 | 161,766,957 |
| nssv11652089 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 161,766,880 | 161,766,957 |
| nssv11628761 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 162,688,032 | 162,688,109 | ||
| nssv11628762 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 162,688,032 | 162,688,109 | ||
| nssv11629581 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 162,688,032 | 162,688,109 | ||
| nssv11629582 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 162,688,032 | 162,688,109 | ||
| nssv11652086 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 162,688,032 | 162,688,109 | ||
| nssv11652087 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 162,688,032 | 162,688,109 | ||
| nssv11652088 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 162,688,032 | 162,688,109 | ||
| nssv11652089 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 162,688,032 | 162,688,109 |