nsv233
- Organism: Homo sapiens
- Study:nstd1 (Tuzun et al. 2005)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:31,064
- Publication(s):Tuzun et al. 2005
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 173 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 163 SVs from 35 studies. See in: genome view
Overlapping variant regions from other studies: 3 SVs from 3 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv233 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 50,857,780 | - | 50,888,843 |
| nsv233 | Remapped | Pass | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 50,895,211 | 50,924,187 | - |
| nsv233 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000003.9 | Chr3 | 50,870,215 | - | 50,901,282 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv233 | inversion | SAMN00000376 | Sequencing | Paired-end mapping | 297 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| nssv233 | Remapped | Good | NC_000003.12:g.(50 857780_?)_(?_50888 843)inv | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 50,857,780 | - | 50,888,843 |
| nssv233 | Remapped | Pass | NC_000003.11:g.(50 895211_?)_(5092418 7_?)inv | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 50,895,211 | 50,924,187 | - |
| nssv233 | Submitted genomic | NC_000003.9:g.(508 70215_?)_(?_509012 82)inv | NCBI35 (hg17) | NC_000003.9 | Chr3 | 50,870,215 | - | 50,901,282 |