nsv2521018
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:5
- Validation:Not tested
- Clinical Assertions: No
- Region Size:78
- Description:MOTIF=[ATTTC],NS=[300],REF=[15.6],RL=[78],RU=[
ATTTC],RPA=[13.6,14.6,16.6,17.6],QUAL=[42859.7] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 302 SVs from 55 studies. See in: genome view
Overlapping variant regions from other studies: 302 SVs from 55 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2521018 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 111,195,818 | 111,195,895 |
| nsv2521018 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000007.13 | Chr7 | 110,835,874 | 110,835,951 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv12462644 | short tandem repeat | (ATTTC) 14.6 | Sequencing | Genotyping |
| nssv12462645 | short tandem repeat | (ATTTC) 16.6 | Sequencing | Genotyping |
| nssv12462646 | short tandem repeat | (ATTTC) 17.6 | Sequencing | Genotyping |
| nssv12498135 | short tandem repeat | (ATTTC) 15.6 (ref) | Sequencing | Genotyping |
| nssv12499055 | short tandem repeat | (ATTTC) 13.6 | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv12462644 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 111,195,818 | 111,195,895 |
| nssv12462645 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 111,195,818 | 111,195,895 |
| nssv12462646 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 111,195,818 | 111,195,895 |
| nssv12498135 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 111,195,818 | 111,195,895 |
| nssv12499055 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 111,195,818 | 111,195,895 |
| nssv12462644 | Submitted genomic | GRCh37 (hg19) | NC_000007.13 | Chr7 | 110,835,874 | 110,835,951 | ||
| nssv12462645 | Submitted genomic | GRCh37 (hg19) | NC_000007.13 | Chr7 | 110,835,874 | 110,835,951 | ||
| nssv12462646 | Submitted genomic | GRCh37 (hg19) | NC_000007.13 | Chr7 | 110,835,874 | 110,835,951 | ||
| nssv12498135 | Submitted genomic | GRCh37 (hg19) | NC_000007.13 | Chr7 | 110,835,874 | 110,835,951 | ||
| nssv12499055 | Submitted genomic | GRCh37 (hg19) | NC_000007.13 | Chr7 | 110,835,874 | 110,835,951 |