nsv260
- Organism: Homo sapiens
- Study:nstd1 (Tuzun et al. 2005)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:35,673
- Publication(s):Tuzun et al. 2005
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 364 SVs from 59 studies. See in: genome view
Overlapping variant regions from other studies: 364 SVs from 59 studies. See in: genome view
Overlapping variant regions from other studies: 13 SVs from 6 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv260 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 131,732,900 | 131,768,572 |
| nsv260 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 132,654,055 | 132,689,727 |
| nsv260 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000004.9 | Chr4 | 133,011,660 | 133,047,332 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv260 | deletion | SAMN00000376 | Sequencing | Paired-end mapping | 297 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv260 | Remapped | Perfect | NC_000004.12:g.(13 1732900_?)_(?_1317 68572)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 131,732,900 | 131,768,572 |
| nssv260 | Remapped | Perfect | NC_000004.11:g.(13 2654055_?)_(?_1326 89727)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 132,654,055 | 132,689,727 |
| nssv260 | Submitted genomic | NC_000004.9:g.(133 011660_?)_(?_13304 7332)del11810 | NCBI35 (hg17) | NC_000004.9 | Chr4 | 133,011,660 | 133,047,332 |