nsv262
- Organism: Homo sapiens
- Study:nstd1 (Tuzun et al. 2005)
- Variant Type:insertion
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:36,674
- Publication(s):Tuzun et al. 2005
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 265 SVs from 59 studies. See in: genome view
Overlapping variant regions from other studies: 72 SVs from 28 studies. See in: genome view
Overlapping variant regions from other studies: 265 SVs from 59 studies. See in: genome view
Overlapping variant regions from other studies: 36 SVs from 13 studies. See in: genome view
Overlapping variant regions from other studies: 21 SVs from 7 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv262 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 155,946,309 | 155,970,334 |
| nsv262 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NW_003315914.1 | Chr4|NW_00 3315914.1 | 110,933 | 147,606 |
| nsv262 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 156,867,461 | 156,891,486 |
| nsv262 | Remapped | Pass | GRCh37.p13 | PATCHES | Second Pass | NW_003315914.1 | Chr4|NW_00 3315914.1 | 110,933 | 147,606 |
| nsv262 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000004.9 | Chr4 | 157,225,066 | 157,249,091 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv262 | insertion | SAMN00000376 | Sequencing | Paired-end mapping | 297 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv262 | Remapped | Pass | NW_003315914.1:g.( 110933_?)_(?_14760 6)ins14300 | GRCh38.p12 | Second Pass | NW_003315914.1 | Chr4|NW_00 3315914.1 | 110,933 | 147,606 |
| nssv262 | Remapped | Perfect | NC_000004.12:g.(15 5946309_?)_(?_1559 70334)ins14300 | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 155,946,309 | 155,970,334 |
| nssv262 | Remapped | Pass | NW_003315914.1:g.( 110933_?)_(?_14760 6)ins14300 | GRCh37.p13 | Second Pass | NW_003315914.1 | Chr4|NW_00 3315914.1 | 110,933 | 147,606 |
| nssv262 | Remapped | Perfect | NC_000004.11:g.(15 6867461_?)_(?_1568 91486)ins14300 | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 156,867,461 | 156,891,486 |
| nssv262 | Submitted genomic | NC_000004.9:g.(157 225066_?)_(?_15724 9091)ins14300 | NCBI35 (hg17) | NC_000004.9 | Chr4 | 157,225,066 | 157,249,091 |