nsv2675339
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:10
- Validation:Not tested
- Clinical Assertions: No
- Region Size:77
- Description:MOTIF=[GT],NS=[295],REF=[38.5],RL=[77],RPA=[26
.0,27.0,28.0,29.0,30.0,31.0,32.0,34.0,35.0],RU=[GT],QUAL=[
160655] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 365 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 365 SVs from 29 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nsv2675339 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | 71,980,540 | 71,980,616 |
nsv2675339 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000023.10 | ChrX | 71,200,390 | 71,200,466 |
Variant Call Information
Variant Call ID | Type | Repeat Motif | Method | Analysis |
---|---|---|---|---|
nssv13348599 | short tandem repeat | (GT) 28 | Sequencing | Genotyping |
nssv13348600 | short tandem repeat | (GT) 30 | Sequencing | Genotyping |
nssv13348601 | short tandem repeat | (GT) 26 | Sequencing | Genotyping |
nssv13348602 | short tandem repeat | (GT) 29 | Sequencing | Genotyping |
nssv13348603 | short tandem repeat | (GT) 27 | Sequencing | Genotyping |
nssv13348604 | short tandem repeat | (GT) 34 | Sequencing | Genotyping |
nssv13348605 | short tandem repeat | (GT) 31 | Sequencing | Genotyping |
nssv13348606 | short tandem repeat | (GT) 32 | Sequencing | Genotyping |
nssv13348607 | short tandem repeat | (GT) 35 | Sequencing | Genotyping |
nssv13348608 | short tandem repeat | (GT) 38.5 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|
nssv13348599 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 71,980,540 | 71,980,616 |
nssv13348600 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 71,980,540 | 71,980,616 |
nssv13348601 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 71,980,540 | 71,980,616 |
nssv13348602 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 71,980,540 | 71,980,616 |
nssv13348603 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 71,980,540 | 71,980,616 |
nssv13348604 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 71,980,540 | 71,980,616 |
nssv13348605 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 71,980,540 | 71,980,616 |
nssv13348606 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 71,980,540 | 71,980,616 |
nssv13348607 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 71,980,540 | 71,980,616 |
nssv13348608 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 71,980,540 | 71,980,616 |
nssv13348599 | Submitted genomic | GRCh37 (hg19) | NC_000023.10 | ChrX | 71,200,390 | 71,200,466 | ||
nssv13348600 | Submitted genomic | GRCh37 (hg19) | NC_000023.10 | ChrX | 71,200,390 | 71,200,466 | ||
nssv13348601 | Submitted genomic | GRCh37 (hg19) | NC_000023.10 | ChrX | 71,200,390 | 71,200,466 | ||
nssv13348602 | Submitted genomic | GRCh37 (hg19) | NC_000023.10 | ChrX | 71,200,390 | 71,200,466 | ||
nssv13348603 | Submitted genomic | GRCh37 (hg19) | NC_000023.10 | ChrX | 71,200,390 | 71,200,466 | ||
nssv13348604 | Submitted genomic | GRCh37 (hg19) | NC_000023.10 | ChrX | 71,200,390 | 71,200,466 | ||
nssv13348605 | Submitted genomic | GRCh37 (hg19) | NC_000023.10 | ChrX | 71,200,390 | 71,200,466 | ||
nssv13348606 | Submitted genomic | GRCh37 (hg19) | NC_000023.10 | ChrX | 71,200,390 | 71,200,466 | ||
nssv13348607 | Submitted genomic | GRCh37 (hg19) | NC_000023.10 | ChrX | 71,200,390 | 71,200,466 | ||
nssv13348608 | Submitted genomic | GRCh37 (hg19) | NC_000023.10 | ChrX | 71,200,390 | 71,200,466 |