nsv2781783
- Organism: Homo sapiens
- Study:nstd133 (Redin et al. 2016)
- Variant Type:complex chromosomal rearrangement
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:11
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:1
- Publication(s):Redin et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 286 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 286 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 274 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 274 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 195 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 205 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 384 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 384 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 377 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 377 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 208 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 218 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 213 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 209 SVs from 16 studies. See in: genome view
Overlapping variant regions from other studies: 203 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 203 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 200 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 200 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 445 SVs from 34 studies. See in: genome view
Overlapping variant regions from other studies: 445 SVs from 34 studies. See in: genome view
Overlapping variant regions from other studies: 451 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 451 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 286 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 286 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 274 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 274 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 195 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 205 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 384 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 384 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 377 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 377 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 208 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 218 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 213 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 209 SVs from 16 studies. See in: genome view
Overlapping variant regions from other studies: 203 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 203 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 200 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 200 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 445 SVs from 34 studies. See in: genome view
Overlapping variant regions from other studies: 445 SVs from 34 studies. See in: genome view
Overlapping variant regions from other studies: 451 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 451 SVs from 26 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|---|
nsv2781783 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 12,403,998 | 12,403,998 | + |
nsv2781783 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 12,403,998 | 12,403,998 | - |
nsv2781783 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 12,544,499 | 12,544,499 | + |
nsv2781783 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 12,544,499 | 12,544,499 | - |
nsv2781783 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 27,694,336 | 27,694,336 | - |
nsv2781783 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 27,784,444 | 27,784,444 | + |
nsv2781783 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 3,276,223 | 3,276,223 | + |
nsv2781783 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 3,276,223 | 3,276,223 | - |
nsv2781783 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 3,395,937 | 3,395,937 | + |
nsv2781783 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 3,395,937 | 3,395,937 | - |
nsv2781783 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 40,182,574 | 40,182,574 | + |
nsv2781783 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 40,258,284 | 40,258,284 | + |
nsv2781783 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 42,736,769 | 42,736,769 | + |
nsv2781783 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 42,826,160 | 42,826,160 | + |
nsv2781783 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 49,450,600 | 49,450,600 | + |
nsv2781783 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 49,450,600 | 49,450,600 | - |
nsv2781783 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 49,514,024 | 49,514,024 | + |
nsv2781783 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 49,514,024 | 49,514,024 | - |
nsv2781783 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 67,679,309 | 67,679,309 | + |
nsv2781783 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 67,679,309 | 67,679,309 | - |
nsv2781783 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 76,439,333 | 76,439,333 | + |
nsv2781783 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 76,439,333 | 76,439,333 | + |
nsv2781783 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 12,403,997 | 12,403,997 | + | ||
nsv2781783 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 12,403,997 | 12,403,997 | - | ||
nsv2781783 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 12,544,498 | 12,544,498 | + | ||
nsv2781783 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 12,544,498 | 12,544,498 | - | ||
nsv2781783 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 25,274,300 | 25,274,300 | - | ||
nsv2781783 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 25,364,408 | 25,364,408 | + | ||
nsv2781783 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 3,276,221 | 3,276,221 | + | ||
nsv2781783 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 3,276,221 | 3,276,221 | - | ||
nsv2781783 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 3,395,935 | 3,395,935 | + | ||
nsv2781783 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 3,395,935 | 3,395,935 | - | ||
nsv2781783 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 37,762,538 | 37,762,538 | + | ||
nsv2781783 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 37,838,248 | 37,838,248 | + | ||
nsv2781783 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 40,316,734 | 40,316,734 | + | ||
nsv2781783 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 40,406,125 | 40,406,125 | + | ||
nsv2781783 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 46,976,970 | 46,976,970 | + | ||
nsv2781783 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 46,976,970 | 46,976,970 | - | ||
nsv2781783 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 47,040,394 | 47,040,394 | + | ||
nsv2781783 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 47,040,394 | 47,040,394 | - | ||
nsv2781783 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 65,346,546 | 65,346,546 | + | ||
nsv2781783 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 65,346,546 | 65,346,546 | - | ||
nsv2781783 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 74,151,289 | 74,151,289 | + | ||
nsv2781783 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 74,151,289 | 74,151,289 | + |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | ClinVar ID | Other Calls in this Sample and Study |
---|---|---|---|---|---|---|
nssv13659963 | intrachromosomal translocation | DGAP167 | Sequencing | Split read and paired-end mapping | SCV000320803 | 11 |
nssv13659969 | copy number gain | DGAP167 | Sequencing | Split read and paired-end mapping | SCV000320803 | 11 |
nssv13659961 | intrachromosomal translocation | DGAP167 | Sequencing | Split read and paired-end mapping | SCV000320803 | 11 |
nssv13659966 | intrachromosomal translocation | DGAP167 | Sequencing | Split read and paired-end mapping | SCV000320803 | 11 |
nssv13659970 | copy number gain | DGAP167 | Sequencing | Split read and paired-end mapping | SCV000320803 | 11 |
nssv13659965 | intrachromosomal translocation | DGAP167 | Sequencing | Split read and paired-end mapping | SCV000320803 | 11 |
nssv13659968 | intrachromosomal translocation | DGAP167 | Sequencing | Split read and paired-end mapping | SCV000320803 | 11 |
nssv13659964 | intrachromosomal translocation | DGAP167 | Sequencing | Split read and paired-end mapping | SCV000320803 | 11 |
nssv13659967 | intrachromosomal translocation | DGAP167 | Sequencing | Split read and paired-end mapping | SCV000320803 | 11 |
nssv13659971 | copy number gain | DGAP167 | Sequencing | Split read and paired-end mapping | SCV000320803 | 11 |
nssv13659972 | copy number loss | DGAP167 | Sequencing | Split read and paired-end mapping | SCV000320803 | 11 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|---|
nssv13659963 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 3,276,223 | 3,276,223 | - | |
nssv13659969 | Remapped | Perfect | NC_000018.10:g.327 6223dupNC_000018.1 0:g.3395937dup | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 3,276,223 | 3,276,223 | |
nssv13659961 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 3,395,937 | 3,395,937 | - | |
nssv13659969 | Remapped | Perfect | NC_000018.10:g.327 6223dupNC_000018.1 0:g.3395937dup | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 3,395,937 | 3,395,937 | |
nssv13659966 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 12,403,998 | 12,403,998 | - | |
nssv13659970 | Remapped | Perfect | NC_000018.10:g.124 03998dupNC_000018. 10:g.12544499dup | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 12,403,998 | 12,403,998 | |
nssv13659965 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 12,544,499 | 12,544,499 | - | |
nssv13659970 | Remapped | Perfect | NC_000018.10:g.124 03998dupNC_000018. 10:g.12544499dup | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 12,544,499 | 12,544,499 | |
nssv13659968 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 27,694,336 | 27,694,336 | - | |
nssv13659961 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 27,784,444 | 27,784,444 | + | |
nssv13659963 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 40,182,574 | 40,182,574 | + | |
nssv13659964 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 40,258,284 | 40,258,284 | + | |
nssv13659966 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 42,736,769 | 42,736,769 | + | |
nssv13659967 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 42,826,160 | 42,826,160 | + | |
nssv13659965 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 49,450,600 | 49,450,600 | - | |
nssv13659971 | Remapped | Perfect | NC_000018.10:g.494 50600dupNC_000018. 10:g.49514024dup | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 49,450,600 | 49,450,600 | |
nssv13659964 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 49,514,024 | 49,514,024 | - | |
nssv13659971 | Remapped | Perfect | NC_000018.10:g.494 50600dupNC_000018. 10:g.49514024dup | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 49,514,024 | 49,514,024 | |
nssv13659967 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 67,679,309 | 67,679,309 | - | |
nssv13659972 | Remapped | Perfect | NC_000018.10:g.676 79309delNC_000018. 10:g.76439333del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 67,679,309 | 67,679,309 | |
nssv13659968 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 76,439,333 | 76,439,333 | + | |
nssv13659972 | Remapped | Perfect | NC_000018.10:g.676 79309delNC_000018. 10:g.76439333del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 76,439,333 | 76,439,333 | |
nssv13659963 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 3,276,221 | 3,276,221 | - | |||
nssv13659969 | Submitted genomic | [NC_000018.9:g.327 6221dup];[NC_00001 8.9:g.3395935dup] | GRCh37 (hg19) | NC_000018.9 | Chr18 | 3,276,221 | 3,276,221 | |||
nssv13659961 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 3,395,935 | 3,395,935 | - | |||
nssv13659969 | Submitted genomic | [NC_000018.9:g.327 6221dup];[NC_00001 8.9:g.3395935dup] | GRCh37 (hg19) | NC_000018.9 | Chr18 | 3,395,935 | 3,395,935 | |||
nssv13659966 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 12,403,997 | 12,403,997 | - | |||
nssv13659970 | Submitted genomic | [NC_000018.9:g.124 03997dup];[NC_0000 18.9:g.12544498dup ] | GRCh37 (hg19) | NC_000018.9 | Chr18 | 12,403,997 | 12,403,997 | |||
nssv13659965 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 12,544,498 | 12,544,498 | - | |||
nssv13659970 | Submitted genomic | [NC_000018.9:g.124 03997dup];[NC_0000 18.9:g.12544498dup ] | GRCh37 (hg19) | NC_000018.9 | Chr18 | 12,544,498 | 12,544,498 | |||
nssv13659968 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 25,274,300 | 25,274,300 | - | |||
nssv13659961 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 25,364,408 | 25,364,408 | + | |||
nssv13659963 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 37,762,538 | 37,762,538 | + | |||
nssv13659964 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 37,838,248 | 37,838,248 | + | |||
nssv13659966 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 40,316,734 | 40,316,734 | + | |||
nssv13659967 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 40,406,125 | 40,406,125 | + | |||
nssv13659965 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 46,976,970 | 46,976,970 | - | |||
nssv13659971 | Submitted genomic | [NC_000018.9:g.469 76970dup];[NC_0000 18.9:g.47040394dup ] | GRCh37 (hg19) | NC_000018.9 | Chr18 | 46,976,970 | 46,976,970 | |||
nssv13659964 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 47,040,394 | 47,040,394 | - | |||
nssv13659971 | Submitted genomic | [NC_000018.9:g.469 76970dup];[NC_0000 18.9:g.47040394dup ] | GRCh37 (hg19) | NC_000018.9 | Chr18 | 47,040,394 | 47,040,394 | |||
nssv13659967 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 65,346,546 | 65,346,546 | - | |||
nssv13659972 | Submitted genomic | [NC_000018.9:g.653 46546del];[NC_0000 18.9:g.74151289del ] | GRCh37 (hg19) | NC_000018.9 | Chr18 | 65,346,546 | 65,346,546 | |||
nssv13659968 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 74,151,289 | 74,151,289 | + | |||
nssv13659972 | Submitted genomic | [NC_000018.9:g.653 46546del];[NC_0000 18.9:g.74151289del ] | GRCh37 (hg19) | NC_000018.9 | Chr18 | 74,151,289 | 74,151,289 |
No validation data were submitted for this variant
Clinical Assertions
Variant Call ID | Sample ID | HGVS | Type | Clinical Interpretation | ClinVar ID | Gender | Other Calls in this Sample and Study |
---|---|---|---|---|---|---|---|
nssv13659963 | DGAP167 | intrachromosomal translocation | SCV000320803 | Female | 11 | ||
nssv13659969 | DGAP167 | GRCh37: [NC_000018.9:g.3276221dup];[NC_000018.9:g.3395935dup] | copy number gain | SCV000320803 | Female | 11 | |
nssv13659961 | DGAP167 | intrachromosomal translocation | SCV000320803 | Female | 11 | ||
nssv13659966 | DGAP167 | intrachromosomal translocation | SCV000320803 | Female | 11 | ||
nssv13659970 | DGAP167 | GRCh37: [NC_000018.9:g.12403997dup];[NC_000018.9:g.12544498dup] | copy number gain | SCV000320803 | Female | 11 | |
nssv13659965 | DGAP167 | intrachromosomal translocation | SCV000320803 | Female | 11 | ||
nssv13659968 | DGAP167 | intrachromosomal translocation | SCV000320803 | Female | 11 | ||
nssv13659964 | DGAP167 | intrachromosomal translocation | SCV000320803 | Female | 11 | ||
nssv13659967 | DGAP167 | intrachromosomal translocation | SCV000320803 | Female | 11 | ||
nssv13659971 | DGAP167 | GRCh37: [NC_000018.9:g.46976970dup];[NC_000018.9:g.47040394dup] | copy number gain | SCV000320803 | Female | 11 | |
nssv13659972 | DGAP167 | GRCh37: [NC_000018.9:g.65346546del];[NC_000018.9:g.74151289del] | copy number loss | SCV000320803 | Female | 11 |