nsv2781826
- Organism: Homo sapiens
- Study:nstd133 (Redin et al. 2016)
- Variant Type:complex chromosomal rearrangement
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:1
- Publication(s):Redin et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 109 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 109 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 104 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 104 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 109 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 109 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 104 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 104 SVs from 24 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|---|
nsv2781826 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 121,984,561 | 121,984,561 | + |
nsv2781826 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 121,984,564 | 121,984,564 | - |
nsv2781826 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 52,374,137 | 52,374,137 | + |
nsv2781826 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 52,374,139 | 52,374,139 | - |
nsv2781826 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000007.13 | Chr7 | 121,624,615 | 121,624,615 | + | ||
nsv2781826 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000007.13 | Chr7 | 121,624,618 | 121,624,618 | - | ||
nsv2781826 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000007.13 | Chr7 | 52,441,833 | 52,441,833 | + | ||
nsv2781826 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000007.13 | Chr7 | 52,441,835 | 52,441,835 | - |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | ClinVar ID | Other Calls in this Sample and Study |
---|---|---|---|---|---|---|
nssv13660119 | inversion | DGAP240 | Sequencing | Split read and paired-end mapping | SCV000320846 | nssv13660120 |
nssv13660120 | inversion | DGAP240 | Sequencing | Split read and paired-end mapping | SCV000320846 | nssv13660119 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nssv13660119 | Remapped | Perfect | NC_000007.14:g.523 74137inv1056NC_000 007.14:g.121984564 inv1056 | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 52,374,137 | 52,374,137 |
nssv13660120 | Remapped | Perfect | NC_000007.14:g.523 74139inv1048NC_000 007.14:g.121984561 inv1048 | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 52,374,139 | 52,374,139 |
nssv13660120 | Remapped | Perfect | NC_000007.14:g.523 74139inv1048NC_000 007.14:g.121984561 inv1048 | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 121,984,561 | 121,984,561 |
nssv13660119 | Remapped | Perfect | NC_000007.14:g.523 74137inv1056NC_000 007.14:g.121984564 inv1056 | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 121,984,564 | 121,984,564 |
nssv13660119 | Submitted genomic | [NC_000007.13:g.52 441833inv1056];[NC _000007.13:g.12162 4618inv1056] | GRCh37 (hg19) | NC_000007.13 | Chr7 | 52,441,833 | 52,441,833 | ||
nssv13660120 | Submitted genomic | [NC_000007.13:g.52 441835inv1048];[NC _000007.13:g.12162 4615inv1048] | GRCh37 (hg19) | NC_000007.13 | Chr7 | 52,441,835 | 52,441,835 | ||
nssv13660120 | Submitted genomic | [NC_000007.13:g.52 441835inv1048];[NC _000007.13:g.12162 4615inv1048] | GRCh37 (hg19) | NC_000007.13 | Chr7 | 121,624,615 | 121,624,615 | ||
nssv13660119 | Submitted genomic | [NC_000007.13:g.52 441833inv1056];[NC _000007.13:g.12162 4618inv1056] | GRCh37 (hg19) | NC_000007.13 | Chr7 | 121,624,618 | 121,624,618 |
No validation data were submitted for this variant
Clinical Assertions
Variant Call ID | Sample ID | HGVS | Type | Clinical Interpretation | ClinVar ID | Gender | Other Calls in this Sample and Study |
---|---|---|---|---|---|---|---|
nssv13660119 | DGAP240 | GRCh37: [NC_000007.13:g.52441833inv1056];[NC_000007.13:g.121624618inv1056] | inversion | SCV000320846 | Male | nssv13660120 | |
nssv13660120 | DGAP240 | GRCh37: [NC_000007.13:g.52441835inv1048];[NC_000007.13:g.121624615inv1048] | inversion | SCV000320846 | Male | nssv13660119 |