nsv2782051
- Organism: Homo sapiens
- Study:nstd132 (Walker et al. 2017)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:125,031
- Publication(s):Walker et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 465 SVs from 60 studies. See in: genome view
Overlapping variant regions from other studies: 465 SVs from 60 studies. See in: genome view
Overlapping variant regions from other studies: 139 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2782051 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 159,295,276 | 159,420,306 |
| nsv2782051 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 160,151,787 | 160,276,817 |
| nsv2782051 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000002.10 | Chr2 | 159,860,033 | 159,985,063 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv13665003 | copy number loss | CGPQ-1441 | SNP array | Genotyping | 43 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv13665003 | Remapped | Perfect | NC_000002.12:g.(?_ 159295276)_(159420 306_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 159,295,276 | 159,420,306 |
| nssv13665003 | Remapped | Perfect | NC_000002.11:g.(?_ 160151787)_(160276 817_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 160,151,787 | 160,276,817 |
| nssv13665003 | Submitted genomic | NC_000002.10:g.(?_ 159860033)_(159985 063_?)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 159,860,033 | 159,985,063 |