nsv2782289
- Organism: Homo sapiens
- Study:nstd132 (Walker et al. 2017)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:331,372
- Publication(s):Walker et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1292 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 1292 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 427 SVs from 24 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv2782289 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 14,993,469 | 15,324,840 |
nsv2782289 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 14,850,978 | 15,182,349 |
nsv2782289 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 14,895,349 | 15,226,720 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv13676119 | copy number loss | CGPQ-2245 | SNP array | Genotyping | 7 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv13676119 | Remapped | Perfect | NC_000008.11:g.(?_ 14993469)_(1532484 0_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 14,993,469 | 15,324,840 |
nssv13676119 | Remapped | Perfect | NC_000008.10:g.(?_ 14850978)_(1518234 9_?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 14,850,978 | 15,182,349 |
nssv13676119 | Submitted genomic | NC_000008.9:g.(?_1 4895349)_(15226720 _?)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 14,895,349 | 15,226,720 |