nsv2782337
- Organism: Homo sapiens
- Study:nstd132 (Walker et al. 2017)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:496,206
- Publication(s):Walker et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1171 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 1171 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 361 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2782337 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 107,952,918 | 108,449,123 |
| nsv2782337 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 107,288,619 | 107,784,824 |
| nsv2782337 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 107,316,518 | 107,812,723 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv13675475 | copy number loss | CGPQ-1657 | SNP array | Genotyping | 55 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv13675475 | Remapped | Perfect | NC_000005.10:g.(?_ 107952918)_(108449 123_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 107,952,918 | 108,449,123 |
| nssv13675475 | Remapped | Perfect | NC_000005.9:g.(?_1 07288619)_(1077848 24_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 107,288,619 | 107,784,824 |
| nssv13675475 | Submitted genomic | NC_000005.8:g.(?_1 07316518)_(1078127 23_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 107,316,518 | 107,812,723 |