nsv2782371
- Organism: Homo sapiens
- Study:nstd132 (Walker et al. 2017)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:331,601
- Publication(s):Walker et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1157 SVs from 82 studies. See in: genome view
Overlapping variant regions from other studies: 1157 SVs from 82 studies. See in: genome view
Overlapping variant regions from other studies: 373 SVs from 22 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2782371 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 161,598,701 | 161,930,301 |
| nsv2782371 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 162,519,853 | 162,851,453 |
| nsv2782371 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 162,739,303 | 163,070,903 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv13671480 | copy number loss | CGPQ-1828 | SNP array | Genotyping | 19 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv13671480 | Remapped | Perfect | NC_000004.12:g.(?_ 161598701)_(161930 301_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 161,598,701 | 161,930,301 |
| nssv13671480 | Remapped | Perfect | NC_000004.11:g.(?_ 162519853)_(162851 453_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 162,519,853 | 162,851,453 |
| nssv13671480 | Submitted genomic | NC_000004.10:g.(?_ 162739303)_(163070 903_?)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 162,739,303 | 163,070,903 |