nsv2782860
- Organism: Homo sapiens
- Study:nstd132 (Walker et al. 2017)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:570,266
- Publication(s):Walker et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1543 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 1543 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 295 SVs from 22 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2782860 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 66,222,287 | 66,792,552 |
| nsv2782860 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 65,989,758 | 66,560,023 |
| nsv2782860 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 65,746,334 | 66,316,599 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv13661538 | copy number loss | CGPQ-230 | SNP array | Genotyping | 23 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv13661538 | Remapped | Perfect | NC_000011.10:g.(?_ 66222287)_(6679255 2_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 66,222,287 | 66,792,552 |
| nssv13661538 | Remapped | Perfect | NC_000011.9:g.(?_6 5989758)_(66560023 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 65,989,758 | 66,560,023 |
| nssv13661538 | Submitted genomic | NC_000011.8:g.(?_6 5746334)_(66316599 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 65,746,334 | 66,316,599 |