nsv2783850
- Organism: Homo sapiens
- Study:nstd132 (Walker et al. 2017)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:352,340
- Publication(s):Walker et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1269 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 1274 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 486 SVs from 25 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2783850 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 53,636,473 | 53,988,812 |
| nsv2783850 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 55,396,233 | 55,748,572 |
| nsv2783850 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 55,066,239 | 55,418,578 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv13662143 | copy number loss | CGPQ-1441 | SNP array | Genotyping | 43 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv13662143 | Remapped | Perfect | NC_000010.11:g.(?_ 53636473)_(5398881 2_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 53,636,473 | 53,988,812 |
| nssv13662143 | Remapped | Perfect | NC_000010.10:g.(?_ 55396233)_(5574857 2_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 55,396,233 | 55,748,572 |
| nssv13662143 | Submitted genomic | NC_000010.9:g.(?_5 5066239)_(55418578 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 55,066,239 | 55,418,578 |