nsv2784742
- Organism: Homo sapiens
- Study:nstd132 (Walker et al. 2017)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:467,254
- Publication(s):Walker et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1145 SVs from 70 studies. See in: genome view
Overlapping variant regions from other studies: 1145 SVs from 70 studies. See in: genome view
Overlapping variant regions from other studies: 257 SVs from 18 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv2784742 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 32,968,938 | 33,436,191 |
nsv2784742 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000018.9 | Chr18 | 30,548,902 | 31,016,155 |
nsv2784742 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000018.8 | Chr18 | 28,802,900 | 29,270,153 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv13664784 | copy number loss | CGPQ-1419 | SNP array | Genotyping | 40 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv13664784 | Remapped | Perfect | NC_000018.10:g.(?_ 32968938)_(3343619 1_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 32,968,938 | 33,436,191 |
nssv13664784 | Remapped | Perfect | NC_000018.9:g.(?_3 0548902)_(31016155 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 30,548,902 | 31,016,155 |
nssv13664784 | Submitted genomic | NC_000018.8:g.(?_2 8802900)_(29270153 _?)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 28,802,900 | 29,270,153 |