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dbVar

Database of genomic structural variation

nsv2785827

Organism: Homo sapiens

Study:nstd132 (Walker et al. 2017)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:381,517

Publication(s):Walker et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 942 SVs from 67 studies. See in: genome view

Remapped(Score: Perfect):32,968,938-33,350,454

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv2785827	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000018.10	Chr18	32,968,938	33,350,454
nsv2785827	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000018.9	Chr18	30,548,902	30,930,418
nsv2785827	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000018.8	Chr18	28,802,900	29,184,416

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv13664781	copy number loss	CGPQ-1721	SNP array	Genotyping	24
nssv13664782	copy number loss	CGPQ-1716	SNP array	Genotyping	18

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv13664781	Remapped	Perfect	NC_000018.10:g.(?_ 32968938)_(3335045 4_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	32,968,938	33,350,454
nssv13664782	Remapped	Perfect	NC_000018.10:g.(?_ 32968938)_(3335045 4_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	32,968,938	33,350,454
nssv13664781	Remapped	Perfect	NC_000018.9:g.(?_3 0548902)_(30930418 _?)del	GRCh37.p13	First Pass	NC_000018.9	Chr18	30,548,902	30,930,418
nssv13664782	Remapped	Perfect	NC_000018.9:g.(?_3 0548902)_(30930418 _?)del	GRCh37.p13	First Pass	NC_000018.9	Chr18	30,548,902	30,930,418
nssv13664781	Submitted genomic		NC_000018.8:g.(?_2 8802900)_(29184416 _?)del	NCBI36 (hg18)		NC_000018.8	Chr18	28,802,900	29,184,416
nssv13664782	Submitted genomic		NC_000018.8:g.(?_2 8802900)_(29184416 _?)del	NCBI36 (hg18)		NC_000018.8	Chr18	28,802,900	29,184,416

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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