nsv2787068
- Organism: Homo sapiens
- Study:nstd132 (Walker et al. 2017)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:315,373
- Publication(s):Walker et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1115 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 1117 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 417 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2787068 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 3,220,888 | 3,536,260 |
| nsv2787068 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 3,220,888 | 3,536,260 |
| nsv2787068 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 3,210,888 | 3,526,260 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv13676419 | copy number loss | CGPQ-1123 | SNP array | Genotyping | 12 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv13676419 | Remapped | Perfect | NC_000009.12:g.(?_ 3220888)_(3536260_ ?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 3,220,888 | 3,536,260 |
| nssv13676419 | Remapped | Perfect | NC_000009.11:g.(?_ 3220888)_(3536260_ ?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 3,220,888 | 3,536,260 |
| nssv13676419 | Submitted genomic | NC_000009.10:g.(?_ 3210888)_(3526260_ ?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 3,210,888 | 3,526,260 |