nsv281
- Organism: Homo sapiens
- Study:nstd1 (Tuzun et al. 2005)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:49,018
- Publication(s):Tuzun et al. 2005
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 470 SVs from 66 studies. See in: genome view
Overlapping variant regions from other studies: 159 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 470 SVs from 66 studies. See in: genome view
Overlapping variant regions from other studies: 21 SVs from 7 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv281 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 179,602,551 | - | 179,651,568 |
| nsv281 | Remapped | Pass | GRCh38.p12 | PATCHES | Second Pass | NW_016107298.1 | Chr5|NW_01 6107298.1 | 368,812 | 400,210 | - |
| nsv281 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 179,029,552 | - | 179,078,569 |
| nsv281 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000005.8 | Chr5 | 178,962,158 | - | 179,011,175 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv281 | inversion | SAMN00000376 | Sequencing | Paired-end mapping | 297 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| nssv281 | Remapped | Pass | NW_016107298.1:g.( 368812_?)_(400210_ ?)inv | GRCh38.p12 | Second Pass | NW_016107298.1 | Chr5|NW_01 6107298.1 | 368,812 | 400,210 | - |
| nssv281 | Remapped | Perfect | NC_000005.10:g.(17 9602551_?)_(?_1796 51568)inv | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 179,602,551 | - | 179,651,568 |
| nssv281 | Remapped | Perfect | NC_000005.9:g.(179 029552_?)_(?_17907 8569)inv | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 179,029,552 | - | 179,078,569 |
| nssv281 | Submitted genomic | NC_000005.8:g.(178 962158_?)_(?_17901 1175)inv | NCBI35 (hg17) | NC_000005.8 | Chr5 | 178,962,158 | - | 179,011,175 |