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dbVar

Database of genomic structural variation

nsv3063

Organism: Homo sapiens

Study:nstd2 (Kidd et al. 2008)
Variant Type:insertion
Method Type:Sequencing
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:53,477

Publication(s):Kidd et al. 2008

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 233 SVs from 41 studies. See in: genome view

Remapped(Score: Perfect):181,404,842-181,458,318

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv3063	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	181,404,842	181,458,318
nsv3063	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	182,269,569	182,323,045
nsv3063	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000002.9	Chr2	182,095,075	182,148,551

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv7588	insertion	NA12156	Sequencing	Paired-end mapping	3,265
nssv4484	insertion	NA12878	Sequencing	Paired-end mapping	1,451

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nssv7588	Remapped	Perfect	NC_000002.12:g.(18 1404842_?)_(?_1814 38778)ins5501	GRCh38.p12	First Pass	NC_000002.12	Chr2	181,404,842	181,438,778
nssv4484	Remapped	Perfect	NC_000002.12:g.(18 1428031_?)_(?_1814 58318)ins6200	GRCh38.p12	First Pass	NC_000002.12	Chr2	181,428,031	181,458,318
nssv7588	Remapped	Perfect	NC_000002.11:g.(18 2269569_?)_(?_1823 03505)ins5501	GRCh37.p13	First Pass	NC_000002.11	Chr2	182,269,569	182,303,505
nssv4484	Remapped	Perfect	NC_000002.11:g.(18 2292758_?)_(?_1823 23045)ins6200	GRCh37.p13	First Pass	NC_000002.11	Chr2	182,292,758	182,323,045
nssv7588	Submitted genomic		NC_000002.9:g.(182 095075_?)_(?_18212 9011)ins5501	NCBI35 (hg17)		NC_000002.9	Chr2	182,095,075	182,129,011
nssv4484	Submitted genomic		NC_000002.9:g.(182 118264_?)_(?_18214 8551)ins6200	NCBI35 (hg17)		NC_000002.9	Chr2	182,118,264	182,148,551

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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