nsv3066880
- Organism: Homo sapiens
- Study:nstd140 (Fan et al. 2017)
- Variant Type:insertion
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant is Defined by:KY429387
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Fan et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1070 SVs from 67 studies. See in: genome view
Overlapping variant regions from other studies: 331 SVs from 34 studies. See in: genome view
Overlapping variant regions from other studies: 1073 SVs from 67 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nsv3066880 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000022.11 | Chr22 | 22,535,906 | 22,535,906 |
nsv3066880 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187629.1 | Chr22|NT_1 87629.1 | 171,563 | 171,563 |
nsv3066880 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000022.10 | Chr22 | 22,878,325 | 22,878,325 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv14038113 | insertion | CHM1 | Sequencing | Local sequence assembly | 7,551 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nssv14038113 | Remapped | Perfect | NT_187629.1:g.1715 63_171564ins? | GRCh38.p12 | Second Pass | NT_187629.1 | Chr22|NT_1 87629.1 | 171,563 | 171,563 |
nssv14038113 | Remapped | Perfect | NC_000022.11:g.225 35906_22535907ins? | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 22,535,906 | 22,535,906 |
nssv14038113 | Submitted genomic | NC_000022.10:g.228 78325_22878326ins? | GRCh37 (hg19) | NC_000022.10 | Chr22 | 22,878,325 | 22,878,325 |