nsv3067140
- Organism: Homo sapiens
- Study:nstd143 (Shang et al. 2017)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:30,774
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 841 SVs from 78 studies. See in: genome view
Overlapping variant regions from other studies: 841 SVs from 78 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3067140 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 171,261 | 202,034 |
| nsv3067140 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000016.9 | Chr16 | 221,260 | 252,033 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv14038744 | deletion | Sequencing | Read depth and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14038744 | Remapped | Perfect | NC_000016.10:g.171 261_202034del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 171,261 | 202,034 |
| nssv14038744 | Submitted genomic | NC_000016.9:g.2212 60_252033del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 221,260 | 252,033 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv14038744 | 4.49e-005 |