nsv3082
- Organism: Homo sapiens
- Study:nstd2 (Kidd et al. 2008)
- Variant Type:insertion
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:60,556
- Publication(s):Kidd et al. 2008
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 269 SVs from 48 studies. See in: genome view
Overlapping variant regions from other studies: 269 SVs from 48 studies. See in: genome view
Overlapping variant regions from other studies: 9 SVs from 3 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3082 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 190,627,513 | 190,688,068 |
| nsv3082 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 191,492,239 | 191,552,794 |
| nsv3082 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000002.9 | Chr2 | 191,317,745 | 191,378,300 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv3042 | insertion | NA18555 | Sequencing | Paired-end mapping | 1,472 |
| nssv11028 | insertion | SAMN00000376 | Sequencing | Paired-end mapping | 366 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv3042 | Remapped | Perfect | NC_000002.12:g.(19 0627513_?)_(?_1906 62167)ins5374 | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 190,627,513 | 190,662,167 |
| nssv11028 | Remapped | Perfect | NC_000002.12:g.(19 0657250_?)_(?_1906 88068)ins9067 | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 190,657,250 | 190,688,068 |
| nssv3042 | Remapped | Perfect | NC_000002.11:g.(19 1492239_?)_(?_1915 26893)ins5374 | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 191,492,239 | 191,526,893 |
| nssv11028 | Remapped | Perfect | NC_000002.11:g.(19 1521976_?)_(?_1915 52794)ins9067 | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 191,521,976 | 191,552,794 |
| nssv3042 | Submitted genomic | NC_000002.9:g.(191 317745_?)_(?_19135 2399)ins5374 | NCBI35 (hg17) | NC_000002.9 | Chr2 | 191,317,745 | 191,352,399 | ||
| nssv11028 | Submitted genomic | NC_000002.9:g.(191 347482_?)_(?_19137 8300)ins9067 | NCBI35 (hg17) | NC_000002.9 | Chr2 | 191,347,482 | 191,378,300 |