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dbVar

Database of genomic structural variation

nsv3110249

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:25,264

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 349 SVs from 47 studies. See in: genome view

Remapped(Score: Perfect):9,184,424-9,209,687

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3110249	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	9,184,424	9,209,687
nsv3110249	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000004.11	Chr4	9,186,150	9,211,413

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14090705	deletion	sample186	Oligo aCGH	Probe signal intensity	82
nssv14092224	deletion	sample235	Oligo aCGH	Probe signal intensity	64
nssv14093417	deletion	sample287	Oligo aCGH	Probe signal intensity	79
nssv14094691	deletion	sample359	Oligo aCGH	Probe signal intensity	103
nssv14094801	deletion	sample373	Oligo aCGH	Probe signal intensity	100

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14090705	Remapped	Perfect	NC_000004.12:g.(?_ 9184424)_(9209687_ ?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	9,184,424	9,209,687
nssv14092224	Remapped	Perfect	NC_000004.12:g.(?_ 9184424)_(9209687_ ?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	9,184,424	9,209,687
nssv14093417	Remapped	Perfect	NC_000004.12:g.(?_ 9184424)_(9209687_ ?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	9,184,424	9,209,687
nssv14094691	Remapped	Perfect	NC_000004.12:g.(?_ 9184424)_(9209687_ ?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	9,184,424	9,209,687
nssv14094801	Remapped	Perfect	NC_000004.12:g.(?_ 9184424)_(9209687_ ?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	9,184,424	9,209,687
nssv14090705	Submitted genomic		NC_000004.11:g.(?_ 9186150)_(9211413_ ?)del	GRCh37 (hg19)		NC_000004.11	Chr4	9,186,150	9,211,413
nssv14092224	Submitted genomic		NC_000004.11:g.(?_ 9186150)_(9211413_ ?)del	GRCh37 (hg19)		NC_000004.11	Chr4	9,186,150	9,211,413
nssv14093417	Submitted genomic		NC_000004.11:g.(?_ 9186150)_(9211413_ ?)del	GRCh37 (hg19)		NC_000004.11	Chr4	9,186,150	9,211,413
nssv14094691	Submitted genomic		NC_000004.11:g.(?_ 9186150)_(9211413_ ?)del	GRCh37 (hg19)		NC_000004.11	Chr4	9,186,150	9,211,413
nssv14094801	Submitted genomic		NC_000004.11:g.(?_ 9186150)_(9211413_ ?)del	GRCh37 (hg19)		NC_000004.11	Chr4	9,186,150	9,211,413

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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