nsv3110733
- Organism: Homo sapiens
- Study:nstd145 (Lu et al. 2017)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:GRCh37 (hg19)
- Variant Calls:10
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,438
- Publication(s):Lu et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 340 SVs from 67 studies. See in: genome view
Overlapping variant regions from other studies: 340 SVs from 67 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3110733 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 118,205,483 | 118,207,920 |
| nsv3110733 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 119,126,638 | 119,129,075 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14089313 | deletion | sample111 | Oligo aCGH | Probe signal intensity | 89 |
| nssv14092163 | deletion | sample222 | Oligo aCGH | Probe signal intensity | 71 |
| nssv14093381 | deletion | sample279 | Oligo aCGH | Probe signal intensity | 55 |
| nssv14094916 | deletion | sample394 | Oligo aCGH | Probe signal intensity | 69 |
| nssv14107124 | deletion | sample4 | Oligo aCGH | Probe signal intensity | 66 |
| nssv14107224 | deletion | sample22 | Oligo aCGH | Probe signal intensity | 21 |
| nssv14107331 | deletion | sample40 | Oligo aCGH | Probe signal intensity | 87 |
| nssv14107409 | deletion | sample53 | Oligo aCGH | Probe signal intensity | 59 |
| nssv14107426 | deletion | sample56 | Oligo aCGH | Probe signal intensity | 76 |
| nssv14107555 | deletion | sample78 | Oligo aCGH | Probe signal intensity | 91 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14089313 | Remapped | Perfect | NC_000004.12:g.(?_ 118205483)_(118207 920_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 118,205,483 | 118,207,920 |
| nssv14092163 | Remapped | Perfect | NC_000004.12:g.(?_ 118205483)_(118207 920_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 118,205,483 | 118,207,920 |
| nssv14093381 | Remapped | Perfect | NC_000004.12:g.(?_ 118205483)_(118207 920_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 118,205,483 | 118,207,920 |
| nssv14094916 | Remapped | Perfect | NC_000004.12:g.(?_ 118205483)_(118207 920_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 118,205,483 | 118,207,920 |
| nssv14107124 | Remapped | Perfect | NC_000004.12:g.(?_ 118205483)_(118207 920_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 118,205,483 | 118,207,920 |
| nssv14107224 | Remapped | Perfect | NC_000004.12:g.(?_ 118205483)_(118207 920_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 118,205,483 | 118,207,920 |
| nssv14107331 | Remapped | Perfect | NC_000004.12:g.(?_ 118205483)_(118207 920_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 118,205,483 | 118,207,920 |
| nssv14107409 | Remapped | Perfect | NC_000004.12:g.(?_ 118205483)_(118207 920_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 118,205,483 | 118,207,920 |
| nssv14107426 | Remapped | Perfect | NC_000004.12:g.(?_ 118205483)_(118207 920_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 118,205,483 | 118,207,920 |
| nssv14107555 | Remapped | Perfect | NC_000004.12:g.(?_ 118205483)_(118207 920_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 118,205,483 | 118,207,920 |
| nssv14089313 | Submitted genomic | NC_000004.11:g.(?_ 119126638)_(119129 075_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 119,126,638 | 119,129,075 | ||
| nssv14092163 | Submitted genomic | NC_000004.11:g.(?_ 119126638)_(119129 075_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 119,126,638 | 119,129,075 | ||
| nssv14093381 | Submitted genomic | NC_000004.11:g.(?_ 119126638)_(119129 075_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 119,126,638 | 119,129,075 | ||
| nssv14094916 | Submitted genomic | NC_000004.11:g.(?_ 119126638)_(119129 075_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 119,126,638 | 119,129,075 | ||
| nssv14107124 | Submitted genomic | NC_000004.11:g.(?_ 119126638)_(119129 075_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 119,126,638 | 119,129,075 | ||
| nssv14107224 | Submitted genomic | NC_000004.11:g.(?_ 119126638)_(119129 075_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 119,126,638 | 119,129,075 | ||
| nssv14107331 | Submitted genomic | NC_000004.11:g.(?_ 119126638)_(119129 075_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 119,126,638 | 119,129,075 | ||
| nssv14107409 | Submitted genomic | NC_000004.11:g.(?_ 119126638)_(119129 075_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 119,126,638 | 119,129,075 | ||
| nssv14107426 | Submitted genomic | NC_000004.11:g.(?_ 119126638)_(119129 075_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 119,126,638 | 119,129,075 | ||
| nssv14107555 | Submitted genomic | NC_000004.11:g.(?_ 119126638)_(119129 075_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 119,126,638 | 119,129,075 |