nsv3110734
- Organism: Homo sapiens
- Study:nstd145 (Lu et al. 2017)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:GRCh37 (hg19)
- Variant Calls:5
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,981
- Publication(s):Lu et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 275 SVs from 41 studies. See in: genome view
Overlapping variant regions from other studies: 275 SVs from 41 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3110734 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000022.11 | Chr22 | 45,158,685 | 45,160,665 |
| nsv3110734 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000022.10 | Chr22 | 45,554,566 | 45,556,546 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14102682 | deletion | sample60 | Oligo aCGH | Probe signal intensity | 87 |
| nssv14102993 | deletion | sample266 | Oligo aCGH | Probe signal intensity | 74 |
| nssv14103005 | deletion | sample274 | Oligo aCGH | Probe signal intensity | 73 |
| nssv14103580 | deletion | sample155 | Oligo aCGH | Probe signal intensity | 87 |
| nssv14103613 | deletion | sample170 | Oligo aCGH | Probe signal intensity | 62 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14102682 | Remapped | Perfect | NC_000022.11:g.(?_ 45158685)_(4516066 5_?)del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 45,158,685 | 45,160,665 |
| nssv14102993 | Remapped | Perfect | NC_000022.11:g.(?_ 45158685)_(4516066 5_?)del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 45,158,685 | 45,160,665 |
| nssv14103005 | Remapped | Perfect | NC_000022.11:g.(?_ 45158685)_(4516066 5_?)del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 45,158,685 | 45,160,665 |
| nssv14103580 | Remapped | Perfect | NC_000022.11:g.(?_ 45158685)_(4516066 5_?)del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 45,158,685 | 45,160,665 |
| nssv14103613 | Remapped | Perfect | NC_000022.11:g.(?_ 45158685)_(4516066 5_?)del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 45,158,685 | 45,160,665 |
| nssv14102682 | Submitted genomic | NC_000022.10:g.(?_ 45554566)_(4555654 6_?)del | GRCh37 (hg19) | NC_000022.10 | Chr22 | 45,554,566 | 45,556,546 | ||
| nssv14102993 | Submitted genomic | NC_000022.10:g.(?_ 45554566)_(4555654 6_?)del | GRCh37 (hg19) | NC_000022.10 | Chr22 | 45,554,566 | 45,556,546 | ||
| nssv14103005 | Submitted genomic | NC_000022.10:g.(?_ 45554566)_(4555654 6_?)del | GRCh37 (hg19) | NC_000022.10 | Chr22 | 45,554,566 | 45,556,546 | ||
| nssv14103580 | Submitted genomic | NC_000022.10:g.(?_ 45554566)_(4555654 6_?)del | GRCh37 (hg19) | NC_000022.10 | Chr22 | 45,554,566 | 45,556,546 | ||
| nssv14103613 | Submitted genomic | NC_000022.10:g.(?_ 45554566)_(4555654 6_?)del | GRCh37 (hg19) | NC_000022.10 | Chr22 | 45,554,566 | 45,556,546 |