nsv3110971
- Organism: Homo sapiens
- Study:nstd145 (Lu et al. 2017)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:GRCh37 (hg19)
- Variant Calls:6
- Validation:Not tested
- Clinical Assertions: No
- Region Size:56,417
- Publication(s):Lu et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 428 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 424 SVs from 62 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3110971 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 97,949,128 | 98,005,544 |
| nsv3110971 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 97,820,128 | 97,876,272 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14090249 | deletion | sample395 | Oligo aCGH | Probe signal intensity | 85 |
| nssv14090882 | deletion | sample83 | Oligo aCGH | Probe signal intensity | 88 |
| nssv14090892 | deletion | sample88 | Oligo aCGH | Probe signal intensity | 71 |
| nssv14093114 | deletion | sample313 | Oligo aCGH | Probe signal intensity | 80 |
| nssv14093153 | deletion | sample324 | Oligo aCGH | Probe signal intensity | 54 |
| nssv14093160 | deletion | sample328 | Oligo aCGH | Probe signal intensity | 70 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14090249 | Remapped | Good | NC_000011.10:g.(?_ 97949128)_(9800554 4_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 97,949,128 | 98,005,544 |
| nssv14090882 | Remapped | Good | NC_000011.10:g.(?_ 97949128)_(9800554 4_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 97,949,128 | 98,005,544 |
| nssv14090892 | Remapped | Good | NC_000011.10:g.(?_ 97949128)_(9800554 4_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 97,949,128 | 98,005,544 |
| nssv14093114 | Remapped | Good | NC_000011.10:g.(?_ 97949128)_(9800554 4_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 97,949,128 | 98,005,544 |
| nssv14093153 | Remapped | Good | NC_000011.10:g.(?_ 97949128)_(9800554 4_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 97,949,128 | 98,005,544 |
| nssv14093160 | Remapped | Good | NC_000011.10:g.(?_ 97949128)_(9800554 4_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 97,949,128 | 98,005,544 |
| nssv14090249 | Submitted genomic | NC_000011.9:g.(?_9 7820128)_(97876272 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 97,820,128 | 97,876,272 | ||
| nssv14090882 | Submitted genomic | NC_000011.9:g.(?_9 7820128)_(97876272 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 97,820,128 | 97,876,272 | ||
| nssv14090892 | Submitted genomic | NC_000011.9:g.(?_9 7820128)_(97876272 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 97,820,128 | 97,876,272 | ||
| nssv14093114 | Submitted genomic | NC_000011.9:g.(?_9 7820128)_(97876272 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 97,820,128 | 97,876,272 | ||
| nssv14093153 | Submitted genomic | NC_000011.9:g.(?_9 7820128)_(97876272 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 97,820,128 | 97,876,272 | ||
| nssv14093160 | Submitted genomic | NC_000011.9:g.(?_9 7820128)_(97876272 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 97,820,128 | 97,876,272 |