nsv3110986

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:37
Validation:Not tested
Clinical Assertions: No
Region Size:11,142

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 925 SVs from 74 studies. See in: genome view

Remapped(Score: Perfect):17,640,091-17,651,232

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3110986	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nsv3110986	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	17,640,200	17,651,341

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14082546	deletion	sample363	Oligo aCGH	Probe signal intensity	100
nssv14082645	deletion	sample391	Oligo aCGH	Probe signal intensity	81
nssv14082697	deletion	sample402	Oligo aCGH	Probe signal intensity	95
nssv14082749	deletion	sample414	Oligo aCGH	Probe signal intensity	53
nssv14096677	deletion	sample5	Oligo aCGH	Probe signal intensity	69
nssv14096732	deletion	sample23	Oligo aCGH	Probe signal intensity	60
nssv14096738	deletion	sample25	Oligo aCGH	Probe signal intensity	82
nssv14096751	deletion	sample28	Oligo aCGH	Probe signal intensity	68
nssv14096754	deletion	sample29	Oligo aCGH	Probe signal intensity	81
nssv14096781	deletion	sample40	Oligo aCGH	Probe signal intensity	87
nssv14096860	deletion	sample59	Oligo aCGH	Probe signal intensity	88
nssv14096865	deletion	sample60	Oligo aCGH	Probe signal intensity	87
nssv14096875	deletion	sample61	Oligo aCGH	Probe signal intensity	81
nssv14096910	deletion	sample70	Oligo aCGH	Probe signal intensity	94
nssv14096916	deletion	sample71	Oligo aCGH	Probe signal intensity	91
nssv14097301	deletion	sample84	Oligo aCGH	Probe signal intensity	76
nssv14097357	deletion	sample98	Oligo aCGH	Probe signal intensity	89
nssv14097490	deletion	sample132	Oligo aCGH	Probe signal intensity	11
nssv14108429	deletion	sample145	Oligo aCGH	Probe signal intensity	103
nssv14108772	deletion	sample157	Oligo aCGH	Probe signal intensity	85
nssv14108788	deletion	sample160	Oligo aCGH	Probe signal intensity	90
nssv14108823	deletion	sample167	Oligo aCGH	Probe signal intensity	83
nssv14108845	deletion	sample172	Oligo aCGH	Probe signal intensity	55
nssv14108850	deletion	sample173	Oligo aCGH	Probe signal intensity	82
nssv14108868	deletion	sample178	Oligo aCGH	Probe signal intensity	77
nssv14108912	deletion	sample189	Oligo aCGH	Probe signal intensity	59
nssv14108947	deletion	sample198	Oligo aCGH	Probe signal intensity	84
nssv14108973	deletion	sample203	Oligo aCGH	Probe signal intensity	88
nssv14109035	deletion	sample221	Oligo aCGH	Probe signal intensity	62
nssv14109045	deletion	sample225	Oligo aCGH	Probe signal intensity	65
nssv14109078	deletion	sample234	Oligo aCGH	Probe signal intensity	93
nssv14109120	deletion	sample245	Oligo aCGH	Probe signal intensity	89
nssv14109169	deletion	sample263	Oligo aCGH	Probe signal intensity	86
nssv14109196	deletion	sample271	Oligo aCGH	Probe signal intensity	66
nssv14109219	deletion	sample276	Oligo aCGH	Probe signal intensity	85
nssv14109287	deletion	sample299	Oligo aCGH	Probe signal intensity	85
nssv14109432	deletion	sample345	Oligo aCGH	Probe signal intensity	83

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14082546	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14082645	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14082697	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14082749	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14096677	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14096732	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14096738	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14096751	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14096754	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14096781	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14096860	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14096865	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14096875	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14096910	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14096916	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14097301	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14097357	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14097490	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14108429	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14108772	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14108788	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14108823	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14108845	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14108850	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14108868	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14108912	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14108947	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14108973	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14109035	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14109045	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14109078	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14109120	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14109169	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14109196	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14109219	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14109287	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14109432	Remapped	Perfect	NC_000005.10:g.(?_ 17640091)_(1765123 2_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,640,091	17,651,232
nssv14082546	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14082645	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14082697	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14082749	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14096677	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14096732	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14096738	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14096751	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14096754	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14096781	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14096860	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14096865	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14096875	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14096910	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14096916	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14097301	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14097357	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14097490	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14108429	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14108772	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14108788	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14108823	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14108845	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14108850	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14108868	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14108912	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14108947	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14108973	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14109035	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14109045	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14109078	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14109120	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14109169	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14109196	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14109219	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14109287	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341
nssv14109432	Submitted genomic		NC_000005.9:g.(?_1 7640200)_(17651341 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,640,200	17,651,341

dbVar

Database of genomic structural variation

nsv3110986

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant