Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv3111003

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:22,155

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 893 SVs from 80 studies. See in: genome view

Remapped(Score: Perfect):1,580,947-1,603,101

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3111003	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000020.11	Chr20	1,580,947	1,603,101
nsv3111003	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000020.10	Chr20	1,561,593	1,583,747

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14099705	deletion	sample38	Oligo aCGH	Probe signal intensity	92
nssv14099904	deletion	sample189	Oligo aCGH	Probe signal intensity	59
nssv14099979	deletion	sample241	Oligo aCGH	Probe signal intensity	59
nssv14100637	deletion	sample271	Oligo aCGH	Probe signal intensity	66

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14099705	Remapped	Perfect	NC_000020.11:g.(?_ 1580947)_(1603101_ ?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	1,580,947	1,603,101
nssv14099904	Remapped	Perfect	NC_000020.11:g.(?_ 1580947)_(1603101_ ?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	1,580,947	1,603,101
nssv14099979	Remapped	Perfect	NC_000020.11:g.(?_ 1580947)_(1603101_ ?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	1,580,947	1,603,101
nssv14100637	Remapped	Perfect	NC_000020.11:g.(?_ 1580947)_(1603101_ ?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	1,580,947	1,603,101
nssv14099705	Submitted genomic		NC_000020.10:g.(?_ 1561593)_(1583747_ ?)del	GRCh37 (hg19)		NC_000020.10	Chr20	1,561,593	1,583,747
nssv14099904	Submitted genomic		NC_000020.10:g.(?_ 1561593)_(1583747_ ?)del	GRCh37 (hg19)		NC_000020.10	Chr20	1,561,593	1,583,747
nssv14099979	Submitted genomic		NC_000020.10:g.(?_ 1561593)_(1583747_ ?)del	GRCh37 (hg19)		NC_000020.10	Chr20	1,561,593	1,583,747
nssv14100637	Submitted genomic		NC_000020.10:g.(?_ 1561593)_(1583747_ ?)del	GRCh37 (hg19)		NC_000020.10	Chr20	1,561,593	1,583,747

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI