nsv3111103

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:45
Validation:Not tested
Clinical Assertions: No
Region Size:6,269

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 493 SVs from 68 studies. See in: genome view

Remapped(Score: Perfect):40,680,342-40,686,610

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3111103	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nsv3111103	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000018.9	Chr18	38,260,306	38,266,574

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14098738	deletion	sample6	Oligo aCGH	Probe signal intensity	85
nssv14099301	deletion	sample140	Oligo aCGH	Probe signal intensity	85
nssv14099332	deletion	sample156	Oligo aCGH	Probe signal intensity	83
nssv14099342	deletion	sample163	Oligo aCGH	Probe signal intensity	93
nssv14099344	deletion	sample164	Oligo aCGH	Probe signal intensity	57
nssv14099425	deletion	sample38	Oligo aCGH	Probe signal intensity	92
nssv14099433	deletion	sample43	Oligo aCGH	Probe signal intensity	92
nssv14099440	deletion	sample47	Oligo aCGH	Probe signal intensity	77
nssv14099447	deletion	sample49	Oligo aCGH	Probe signal intensity	43
nssv14099448	deletion	sample50	Oligo aCGH	Probe signal intensity	68
nssv14099489	deletion	sample76	Oligo aCGH	Probe signal intensity	88
nssv14099499	deletion	sample79	Oligo aCGH	Probe signal intensity	76
nssv14099501	deletion	sample80	Oligo aCGH	Probe signal intensity	80
nssv14099505	deletion	sample81	Oligo aCGH	Probe signal intensity	106
nssv14099542	deletion	sample101	Oligo aCGH	Probe signal intensity	68
nssv14099576	deletion	sample122	Oligo aCGH	Probe signal intensity	97
nssv14099590	deletion	sample133	Oligo aCGH	Probe signal intensity	80
nssv14099593	deletion	sample134	Oligo aCGH	Probe signal intensity	62
nssv14099602	deletion	sample137	Oligo aCGH	Probe signal intensity	82
nssv14100033	deletion	sample204	Oligo aCGH	Probe signal intensity	5
nssv14100044	deletion	sample210	Oligo aCGH	Probe signal intensity	58
nssv14100071	deletion	sample230	Oligo aCGH	Probe signal intensity	32
nssv14100072	deletion	sample231	Oligo aCGH	Probe signal intensity	100
nssv14100079	deletion	sample234	Oligo aCGH	Probe signal intensity	93
nssv14100083	deletion	sample235	Oligo aCGH	Probe signal intensity	64
nssv14100085	deletion	sample236	Oligo aCGH	Probe signal intensity	62
nssv14100089	deletion	sample238	Oligo aCGH	Probe signal intensity	68
nssv14100148	deletion	sample286	Oligo aCGH	Probe signal intensity	84
nssv14100162	deletion	sample291	Oligo aCGH	Probe signal intensity	67
nssv14100170	deletion	sample294	Oligo aCGH	Probe signal intensity	47
nssv14100187	deletion	sample301	Oligo aCGH	Probe signal intensity	26
nssv14100190	deletion	sample302	Oligo aCGH	Probe signal intensity	85
nssv14100192	deletion	sample304	Oligo aCGH	Probe signal intensity	87
nssv14100204	deletion	sample312	Oligo aCGH	Probe signal intensity	89
nssv14100233	deletion	sample331	Oligo aCGH	Probe signal intensity	100
nssv14100238	deletion	sample336	Oligo aCGH	Probe signal intensity	53
nssv14100248	deletion	sample348	Oligo aCGH	Probe signal intensity	70
nssv14100249	deletion	sample349	Oligo aCGH	Probe signal intensity	92
nssv14100254	deletion	sample357	Oligo aCGH	Probe signal intensity	59
nssv14100279	deletion	sample372	Oligo aCGH	Probe signal intensity	71
nssv14100300	deletion	sample386	Oligo aCGH	Probe signal intensity	86
nssv14100304	deletion	sample389	Oligo aCGH	Probe signal intensity	21
nssv14100309	deletion	sample392	Oligo aCGH	Probe signal intensity	75
nssv14100311	deletion	sample393	Oligo aCGH	Probe signal intensity	71
nssv14100314	deletion	sample395	Oligo aCGH	Probe signal intensity	85

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14098738	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14099301	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14099332	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14099342	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14099344	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14099425	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14099433	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14099440	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14099447	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14099448	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14099489	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14099499	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14099501	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14099505	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14099542	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14099576	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14099590	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14099593	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14099602	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100033	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100044	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100071	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100072	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100079	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100083	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100085	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100089	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100148	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100162	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100170	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100187	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100190	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100192	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100204	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100233	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100238	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100248	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100249	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100254	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100279	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100300	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100304	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100309	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100311	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14100314	Remapped	Perfect	NC_000018.10:g.(?_ 40680342)_(4068661 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	40,680,342	40,686,610
nssv14098738	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14099301	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14099332	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14099342	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14099344	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14099425	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14099433	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14099440	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14099447	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14099448	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14099489	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14099499	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14099501	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14099505	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14099542	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14099576	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14099590	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14099593	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14099602	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100033	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100044	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100071	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100072	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100079	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100083	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100085	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100089	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100148	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100162	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100170	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100187	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100190	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100192	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100204	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100233	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100238	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100248	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100249	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100254	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100279	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100300	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100304	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100309	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100311	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574
nssv14100314	Submitted genomic		NC_000018.9:g.(?_3 8260306)_(38266574 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	38,260,306	38,266,574

dbVar

Database of genomic structural variation

nsv3111103

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant