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dbVar

Database of genomic structural variation

nsv3111501

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:3,618

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 437 SVs from 72 studies. See in: genome view

Remapped(Score: Perfect):148,376,746-148,380,363

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3111501	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000007.14	Chr7	148,376,746	148,380,363
nsv3111501	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000007.13	Chr7	148,073,838	148,077,455

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14083361	deletion	sample91	Oligo aCGH	Probe signal intensity	90
nssv14084305	deletion	sample147	Oligo aCGH	Probe signal intensity	78
nssv14084938	deletion	sample389	Oligo aCGH	Probe signal intensity	21
nssv14086805	deletion	sample358	Oligo aCGH	Probe signal intensity	77

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14083361	Remapped	Perfect	NC_000007.14:g.(?_ 148376746)_(148380 363_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	148,376,746	148,380,363
nssv14084305	Remapped	Perfect	NC_000007.14:g.(?_ 148376746)_(148380 363_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	148,376,746	148,380,363
nssv14084938	Remapped	Perfect	NC_000007.14:g.(?_ 148376746)_(148380 363_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	148,376,746	148,380,363
nssv14086805	Remapped	Perfect	NC_000007.14:g.(?_ 148376746)_(148380 363_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	148,376,746	148,380,363
nssv14083361	Submitted genomic		NC_000007.13:g.(?_ 148073838)_(148077 455_?)del	GRCh37 (hg19)		NC_000007.13	Chr7	148,073,838	148,077,455
nssv14084305	Submitted genomic		NC_000007.13:g.(?_ 148073838)_(148077 455_?)del	GRCh37 (hg19)		NC_000007.13	Chr7	148,073,838	148,077,455
nssv14084938	Submitted genomic		NC_000007.13:g.(?_ 148073838)_(148077 455_?)del	GRCh37 (hg19)		NC_000007.13	Chr7	148,073,838	148,077,455
nssv14086805	Submitted genomic		NC_000007.13:g.(?_ 148073838)_(148077 455_?)del	GRCh37 (hg19)		NC_000007.13	Chr7	148,073,838	148,077,455

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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