Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv3111573

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:9
Validation:Not tested
Clinical Assertions: No
Region Size:5,288

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 313 SVs from 69 studies. See in: genome view

Remapped(Score: Perfect):32,061,139-32,066,426

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3111573	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	32,061,139	32,066,426
nsv3111573	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	32,102,631	32,107,918

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14103394	deletion	sample6	Oligo aCGH	Probe signal intensity	85
nssv14104423	deletion	sample69	Oligo aCGH	Probe signal intensity	90
nssv14105280	deletion	sample95	Oligo aCGH	Probe signal intensity	88
nssv14105595	deletion	sample420	Oligo aCGH	Probe signal intensity	92
nssv14107068	deletion	sample262	Oligo aCGH	Probe signal intensity	74
nssv14107931	deletion	sample305	Oligo aCGH	Probe signal intensity	19
nssv14108166	deletion	sample208	Oligo aCGH	Probe signal intensity	111
nssv14108377	deletion	sample244	Oligo aCGH	Probe signal intensity	74
nssv14108713	deletion	sample386	Oligo aCGH	Probe signal intensity	86

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14103394	Remapped	Perfect	NC_000003.12:g.(?_ 32061139)_(3206642 6_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	32,061,139	32,066,426
nssv14104423	Remapped	Perfect	NC_000003.12:g.(?_ 32061139)_(3206642 6_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	32,061,139	32,066,426
nssv14105280	Remapped	Perfect	NC_000003.12:g.(?_ 32061139)_(3206642 6_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	32,061,139	32,066,426
nssv14105595	Remapped	Perfect	NC_000003.12:g.(?_ 32061139)_(3206642 6_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	32,061,139	32,066,426
nssv14107068	Remapped	Perfect	NC_000003.12:g.(?_ 32061139)_(3206642 6_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	32,061,139	32,066,426
nssv14107931	Remapped	Perfect	NC_000003.12:g.(?_ 32061139)_(3206642 6_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	32,061,139	32,066,426
nssv14108166	Remapped	Perfect	NC_000003.12:g.(?_ 32061139)_(3206642 6_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	32,061,139	32,066,426
nssv14108377	Remapped	Perfect	NC_000003.12:g.(?_ 32061139)_(3206642 6_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	32,061,139	32,066,426
nssv14108713	Remapped	Perfect	NC_000003.12:g.(?_ 32061139)_(3206642 6_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	32,061,139	32,066,426
nssv14103394	Submitted genomic		NC_000003.11:g.(?_ 32102631)_(3210791 8_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	32,102,631	32,107,918
nssv14104423	Submitted genomic		NC_000003.11:g.(?_ 32102631)_(3210791 8_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	32,102,631	32,107,918
nssv14105280	Submitted genomic		NC_000003.11:g.(?_ 32102631)_(3210791 8_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	32,102,631	32,107,918
nssv14105595	Submitted genomic		NC_000003.11:g.(?_ 32102631)_(3210791 8_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	32,102,631	32,107,918
nssv14107068	Submitted genomic		NC_000003.11:g.(?_ 32102631)_(3210791 8_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	32,102,631	32,107,918
nssv14107931	Submitted genomic		NC_000003.11:g.(?_ 32102631)_(3210791 8_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	32,102,631	32,107,918
nssv14108166	Submitted genomic		NC_000003.11:g.(?_ 32102631)_(3210791 8_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	32,102,631	32,107,918
nssv14108377	Submitted genomic		NC_000003.11:g.(?_ 32102631)_(3210791 8_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	32,102,631	32,107,918
nssv14108713	Submitted genomic		NC_000003.11:g.(?_ 32102631)_(3210791 8_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	32,102,631	32,107,918

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI