nsv3111623
- Organism: Homo sapiens
- Study:nstd145 (Lu et al. 2017)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:GRCh37 (hg19)
- Variant Calls:16
- Validation:Not tested
- Clinical Assertions: No
- Region Size:11,847
- Publication(s):Lu et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 151 SVs from 55 studies. See in: genome view
Overlapping variant regions from other studies: 151 SVs from 55 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3111623 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 41,231,933 | 41,243,779 |
| nsv3111623 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 41,232,035 | 41,243,881 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14082662 | deletion | sample394 | Oligo aCGH | Probe signal intensity | 69 |
| nssv14082709 | deletion | sample404 | Oligo aCGH | Probe signal intensity | 74 |
| nssv14082753 | deletion | sample416 | Oligo aCGH | Probe signal intensity | 64 |
| nssv14096867 | deletion | sample60 | Oligo aCGH | Probe signal intensity | 87 |
| nssv14096883 | deletion | sample63 | Oligo aCGH | Probe signal intensity | 52 |
| nssv14097251 | deletion | sample76 | Oligo aCGH | Probe signal intensity | 88 |
| nssv14097268 | deletion | sample78 | Oligo aCGH | Probe signal intensity | 91 |
| nssv14097309 | deletion | sample86 | Oligo aCGH | Probe signal intensity | 33 |
| nssv14097315 | deletion | sample87 | Oligo aCGH | Probe signal intensity | 74 |
| nssv14097319 | deletion | sample88 | Oligo aCGH | Probe signal intensity | 71 |
| nssv14108430 | deletion | sample145 | Oligo aCGH | Probe signal intensity | 103 |
| nssv14108802 | deletion | sample162 | Oligo aCGH | Probe signal intensity | 86 |
| nssv14108959 | deletion | sample200 | Oligo aCGH | Probe signal intensity | 73 |
| nssv14109046 | deletion | sample225 | Oligo aCGH | Probe signal intensity | 65 |
| nssv14109121 | deletion | sample245 | Oligo aCGH | Probe signal intensity | 89 |
| nssv14109251 | deletion | sample285 | Oligo aCGH | Probe signal intensity | 67 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14082662 | Remapped | Perfect | NC_000005.10:g.(?_ 41231933)_(4124377 9_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 41,231,933 | 41,243,779 |
| nssv14082709 | Remapped | Perfect | NC_000005.10:g.(?_ 41231933)_(4124377 9_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 41,231,933 | 41,243,779 |
| nssv14082753 | Remapped | Perfect | NC_000005.10:g.(?_ 41231933)_(4124377 9_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 41,231,933 | 41,243,779 |
| nssv14096867 | Remapped | Perfect | NC_000005.10:g.(?_ 41231933)_(4124377 9_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 41,231,933 | 41,243,779 |
| nssv14096883 | Remapped | Perfect | NC_000005.10:g.(?_ 41231933)_(4124377 9_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 41,231,933 | 41,243,779 |
| nssv14097251 | Remapped | Perfect | NC_000005.10:g.(?_ 41231933)_(4124377 9_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 41,231,933 | 41,243,779 |
| nssv14097268 | Remapped | Perfect | NC_000005.10:g.(?_ 41231933)_(4124377 9_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 41,231,933 | 41,243,779 |
| nssv14097309 | Remapped | Perfect | NC_000005.10:g.(?_ 41231933)_(4124377 9_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 41,231,933 | 41,243,779 |
| nssv14097315 | Remapped | Perfect | NC_000005.10:g.(?_ 41231933)_(4124377 9_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 41,231,933 | 41,243,779 |
| nssv14097319 | Remapped | Perfect | NC_000005.10:g.(?_ 41231933)_(4124377 9_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 41,231,933 | 41,243,779 |
| nssv14108430 | Remapped | Perfect | NC_000005.10:g.(?_ 41231933)_(4124377 9_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 41,231,933 | 41,243,779 |
| nssv14108802 | Remapped | Perfect | NC_000005.10:g.(?_ 41231933)_(4124377 9_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 41,231,933 | 41,243,779 |
| nssv14108959 | Remapped | Perfect | NC_000005.10:g.(?_ 41231933)_(4124377 9_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 41,231,933 | 41,243,779 |
| nssv14109046 | Remapped | Perfect | NC_000005.10:g.(?_ 41231933)_(4124377 9_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 41,231,933 | 41,243,779 |
| nssv14109121 | Remapped | Perfect | NC_000005.10:g.(?_ 41231933)_(4124377 9_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 41,231,933 | 41,243,779 |
| nssv14109251 | Remapped | Perfect | NC_000005.10:g.(?_ 41231933)_(4124377 9_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 41,231,933 | 41,243,779 |
| nssv14082662 | Submitted genomic | NC_000005.9:g.(?_4 1232035)_(41243881 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 41,232,035 | 41,243,881 | ||
| nssv14082709 | Submitted genomic | NC_000005.9:g.(?_4 1232035)_(41243881 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 41,232,035 | 41,243,881 | ||
| nssv14082753 | Submitted genomic | NC_000005.9:g.(?_4 1232035)_(41243881 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 41,232,035 | 41,243,881 | ||
| nssv14096867 | Submitted genomic | NC_000005.9:g.(?_4 1232035)_(41243881 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 41,232,035 | 41,243,881 | ||
| nssv14096883 | Submitted genomic | NC_000005.9:g.(?_4 1232035)_(41243881 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 41,232,035 | 41,243,881 | ||
| nssv14097251 | Submitted genomic | NC_000005.9:g.(?_4 1232035)_(41243881 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 41,232,035 | 41,243,881 | ||
| nssv14097268 | Submitted genomic | NC_000005.9:g.(?_4 1232035)_(41243881 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 41,232,035 | 41,243,881 | ||
| nssv14097309 | Submitted genomic | NC_000005.9:g.(?_4 1232035)_(41243881 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 41,232,035 | 41,243,881 | ||
| nssv14097315 | Submitted genomic | NC_000005.9:g.(?_4 1232035)_(41243881 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 41,232,035 | 41,243,881 | ||
| nssv14097319 | Submitted genomic | NC_000005.9:g.(?_4 1232035)_(41243881 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 41,232,035 | 41,243,881 | ||
| nssv14108430 | Submitted genomic | NC_000005.9:g.(?_4 1232035)_(41243881 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 41,232,035 | 41,243,881 | ||
| nssv14108802 | Submitted genomic | NC_000005.9:g.(?_4 1232035)_(41243881 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 41,232,035 | 41,243,881 | ||
| nssv14108959 | Submitted genomic | NC_000005.9:g.(?_4 1232035)_(41243881 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 41,232,035 | 41,243,881 | ||
| nssv14109046 | Submitted genomic | NC_000005.9:g.(?_4 1232035)_(41243881 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 41,232,035 | 41,243,881 | ||
| nssv14109121 | Submitted genomic | NC_000005.9:g.(?_4 1232035)_(41243881 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 41,232,035 | 41,243,881 | ||
| nssv14109251 | Submitted genomic | NC_000005.9:g.(?_4 1232035)_(41243881 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 41,232,035 | 41,243,881 |