nsv3112023

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:42
Validation:Not tested
Clinical Assertions: No
Region Size:3,451

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 322 SVs from 59 studies. See in: genome view

Remapped(Score: Perfect):85,935,374-85,938,824

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3112023	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nsv3112023	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000001.10	Chr1	86,401,057	86,404,507

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14082751	deletion	sample155	Oligo aCGH	Probe signal intensity	87
nssv14083117	deletion	sample175	Oligo aCGH	Probe signal intensity	65
nssv14083511	deletion	sample156	Oligo aCGH	Probe signal intensity	83
nssv14084481	deletion	sample160	Oligo aCGH	Probe signal intensity	90
nssv14086093	deletion	sample226	Oligo aCGH	Probe signal intensity	68
nssv14086904	deletion	sample244	Oligo aCGH	Probe signal intensity	74
nssv14086942	deletion	sample217	Oligo aCGH	Probe signal intensity	80
nssv14087778	deletion	sample168	Oligo aCGH	Probe signal intensity	56
nssv14088213	deletion	sample234	Oligo aCGH	Probe signal intensity	93
nssv14088768	deletion	sample266	Oligo aCGH	Probe signal intensity	74
nssv14089408	deletion	sample112	Oligo aCGH	Probe signal intensity	81
nssv14089859	deletion	sample268	Oligo aCGH	Probe signal intensity	85
nssv14090094	deletion	sample259	Oligo aCGH	Probe signal intensity	86
nssv14090702	deletion	sample117	Oligo aCGH	Probe signal intensity	80
nssv14091834	deletion	sample276	Oligo aCGH	Probe signal intensity	85
nssv14092401	deletion	sample300	Oligo aCGH	Probe signal intensity	97
nssv14092523	deletion	sample29	Oligo aCGH	Probe signal intensity	81
nssv14092612	deletion	sample303	Oligo aCGH	Probe signal intensity	81
nssv14093493	deletion	sample11	Oligo aCGH	Probe signal intensity	90
nssv14093627	deletion	sample128	Oligo aCGH	Probe signal intensity	79
nssv14094754	deletion	sample130	Oligo aCGH	Probe signal intensity	92
nssv14096048	deletion	sample32	Oligo aCGH	Probe signal intensity	87
nssv14096391	deletion	sample34	Oligo aCGH	Probe signal intensity	71
nssv14097388	deletion	sample140	Oligo aCGH	Probe signal intensity	85
nssv14099585	deletion	sample380	Oligo aCGH	Probe signal intensity	98
nssv14100164	deletion	sample383	Oligo aCGH	Probe signal intensity	82
nssv14101134	deletion	sample387	Oligo aCGH	Probe signal intensity	78
nssv14102158	deletion	sample417	Oligo aCGH	Probe signal intensity	83
nssv14102751	deletion	sample419	Oligo aCGH	Probe signal intensity	76
nssv14103332	deletion	sample46	Oligo aCGH	Probe signal intensity	92
nssv14103418	deletion	sample70	Oligo aCGH	Probe signal intensity	94
nssv14103529	deletion	sample71	Oligo aCGH	Probe signal intensity	91
nssv14105174	deletion	sample58	Oligo aCGH	Probe signal intensity	85
nssv14105552	deletion	sample99	Oligo aCGH	Probe signal intensity	74
nssv14105973	deletion	sample7	Oligo aCGH	Probe signal intensity	91
nssv14106782	deletion	sample66	Oligo aCGH	Probe signal intensity	50
nssv14106982	deletion	sample69	Oligo aCGH	Probe signal intensity	90
nssv14107472	deletion	sample10	Oligo aCGH	Probe signal intensity	78
nssv14108017	deletion	sample93	Oligo aCGH	Probe signal intensity	88
nssv14108530	deletion	sample9	Oligo aCGH	Probe signal intensity	78
nssv14108708	deletion	sample97	Oligo aCGH	Probe signal intensity	80
nssv14108804	deletion	sample143	Oligo aCGH	Probe signal intensity	95

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14082751	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14083117	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14083511	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14084481	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14086093	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14086904	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14086942	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14087778	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14088213	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14088768	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14089408	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14089859	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14090094	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14090702	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14091834	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14092401	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14092523	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14092612	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14093493	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14093627	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14094754	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14096048	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14096391	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14097388	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14099585	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14100164	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14101134	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14102158	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14102751	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14103332	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14103418	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14103529	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14105174	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14105552	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14105973	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14106782	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14106982	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14107472	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14108017	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14108530	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14108708	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14108804	Remapped	Perfect	NC_000001.11:g.(?_ 85935374)_(8593882 4_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	85,935,374	85,938,824
nssv14082751	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14083117	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14083511	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14084481	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14086093	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14086904	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14086942	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14087778	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14088213	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14088768	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14089408	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14089859	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14090094	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14090702	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14091834	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14092401	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14092523	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14092612	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14093493	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14093627	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14094754	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14096048	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14096391	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14097388	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14099585	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14100164	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14101134	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14102158	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14102751	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14103332	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14103418	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14103529	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14105174	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14105552	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14105973	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14106782	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14106982	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14107472	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14108017	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14108530	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14108708	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507
nssv14108804	Submitted genomic		NC_000001.10:g.(?_ 86401057)_(8640450 7_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	86,401,057	86,404,507

dbVar

Database of genomic structural variation

nsv3112023

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant